{
    "bcoid": "GLY_000727",
    "title": "Human Protein Biomarkers Citations (Biomarker Database)",
    "description": "Human Protein Biomarkers Citations dataset contains details of the publication present in the dataset ...",
    "filename_list": "human_protein_citations_biomarkers.csv",
    "filename": "human_protein_citations_biomarkers.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Biomarkers Citations (Biomarker Database)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P04275-1...",
                "von Willebra..."
            ],
            [
                "Q8NBJ4-1...",
                "Golgi protei..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "biomarker_id"
                }
            ],
            [
                "P04275-1",
                "von Willebrand factor is a useful biomarker for liver fibrosis and prediction of hepatocellular carcinoma development in patients with hepatitis B and C.",
                "United European gastroenterology journal",
                "2018 Nov",
                "Takaya H, Kawaratani H, Tsuji Y, Nakanishi K, Saikawa S, Sato S, Sawada Y, Kaji K, Okura Y, Shimozato N, Kitade M, Akahane T, Moriya K, Namisaki T, Mitoro A, Matsumoto M, Fukui H, Yoshiji H",
                "protein_xref_pubmed",
                "30386613",
                "protein_xref_glygen_ds",
                "GLY_000625",
                "AA4788-2"
            ],
            [
                "Q8NBJ4-1",
                "Golgi protein GOLM1 is a tissue and urine biomarker of prostate cancer.",
                "Neoplasia (New York, N.Y.)",
                "2008 Nov",
                "Varambally S, Laxman B, Mehra R, Cao Q, Dhanasekaran SM, Tomlins SA, Granger J, Vellaichamy A, Sreekumar A, Yu J, Gu W, Shen R, Ghosh D, Wright LM, Kladney RD, Kuefer R, Rubin MA, Fimmel CJ, Chinnaiyan AM",
                "protein_xref_pubmed",
                "18953438",
                "protein_xref_glygen_ds",
                "GLY_000625",
                "AA4878-1"
            ]
        ]
    },
    "readme": "Name\n   - Human Protein Biomarkers Citations (Biomarker Database)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2023-03-03T02:24:59.574Z\n\nModified on\n   - 2024-05-17T11:24:10.870Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - Human Protein Biomarkers Citations dataset contains details of the publication present in the dataset Human Protein Cancer Biomarkers https://data.glygen.org/GLY_000625\n\nDescription Domain\n   Keywords\n   - Biomarkers\n   - BiomarkerDB\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_biomarkers.csv\n   Output Subdomain\n      Name: human_protein_citations_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_biomarkers.csv\n      Name: human_protein_citations_biomarkers.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_biomarkers.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"172\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"280\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"190\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"200\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"280\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"280\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"biomarker_id\"\n     Description: \"\"\n      Unique Values: \"252\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/human_protein_citations_biomarkers.csv"
}