{
    "bcoid": "GLY_000696",
    "title": "Mouse Proteoform O-GlcNAc Glycosylation Citations (MCW)",
    "description": "The Mouse O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present ...",
    "filename_list": "mouse_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv",
    "filename": "mouse_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations O-GlcNAc (MCW)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A075B5R4-1...",
                "O-GlcNAcylat..."
            ],
            [
                "A0A075B5T2-1...",
                "Differential..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "A0A075B5R4-1",
                "O-GlcNAcylation enhances CPS1 catalytic efficiency for ammonia and promotes ureagenesis.",
                "Nature communications",
                "2022 Sep 5",
                "Soria LR, Makris G, D'Alessio AM, De Angelis A, Boffa I, Pravata VM, Rufenacht V, Attanasio S, Nusco E, Arena P, Ferenbach AT, Paris D, Cuomo P, Motta A, Nitzahn M, Lipshutz GS, Martinez-Pizarro A, Richard E, Desviat LR, Haberle J, van Aalten DMF, Brunetti-Pierri N",
                "protein_xref_pubmed",
                "36064721",
                "protein_xref_oglcnac_db",
                "A0A075B5R4",
                "G49108TO"
            ],
            [
                "A0A075B5T2-1",
                "Differential Detection of O-GlcNAcylated proteins in the heart using antibodies.",
                "Analytical biochemistry",
                "2023-10-01",
                "Narayanan Bhargavi, Zahra Fiddia, Reeves Russell A, Aggarwal Akanksha, O'Meally Robert N, Henry Roger K, Craven Megan, Jacobson Avital, Cole Robert N, Kohr Mark J, Umapathi Priya, Zachara Natasha E",
                "protein_xref_pubmed",
                "37507081",
                "protein_xref_oglcnac_db",
                "A0A075B5T2",
                "G49108TO"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Proteoform O-GlcNAc Glycosylation Citations (MCW)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2022-09-06T16:49:22.879070\n\nModified on\n   - 2024-05-17T11:24:09.711Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu],  Rex R. Berendt [rberendt@mcw.edu],  Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in the dataset Mouse O-GlcNAc Glycosylation Sites (MCW) contributed by Stephanie Olivier's group.\n\nDescription Domain\n   Keywords\n   - O-GlcNAc\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_proteoform_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_proteoform_glycosylation_sites_oglcnac_mcw.csv\n   Output Subdomain\n      Name: mouse_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      Name: mouse_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"4615\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"246\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"129\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"226\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"242\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"246\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"4615\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/mouse_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv"
}