{
    "bcoid": "GLY_000678",
    "title": "Fruitfly Proteoform Phosphorylation Citations (iPTMnet)",
    "description": "The Fruitfly Proteoform Citations (iPTMNet) contains Drosophila melanogaster [taxid:7227] publication ...",
    "filename_list": "fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filename": "fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P02299-1...",
                "Drosophila m..."
            ],
            [
                "Q9VT65-1...",
                "Regulation o..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P02299-1",
                "Drosophila melanogaster SAP18 protein is required for environmental stress responses.",
                "FEBS letters",
                "2011-01-21",
                "Costa Elisabet, Beltran Sergi, Espin\u00e0s M Lluisa",
                "protein_xref_pubmed",
                "21146528",
                "protein_xref_iptmnet",
                "P02299"
            ],
            [
                "Q9VT65-1",
                "Regulation of calpain B from Drosophila melanogaster by phosphorylation.",
                "The FEBS journal",
                "2009-09",
                "Kov\u00e1cs L\u00e1szl\u00f3, Alexa Anita, Klement Eva, K\u00f3kai Endre, Tantos Agnes, G\u00f3gl Gerg\u00f6, Sperka Tam\u00e1s, Medzihradszky Katalin F, T\u00f6zs\u00e9r J\u00f3zsef, Dombr\u00e1di Viktor, Friedrich P\u00e9ter",
                "protein_xref_pubmed",
                "19694808",
                "protein_xref_iptmnet",
                "Q9VT65"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Proteoform Phosphorylation Citations (iPTMnet)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2022-09-02T13:26:18.780372\n\nModified on\n   - 2024-12-05T19:38:57.798Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Proteoform Citations (iPTMNet) contains Drosophila melanogaster [taxid:7227] publication information of phosphorylated proteins from iPTMnet. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from iPTMnet. If you use this dataset please provide proper attribution to iPTMnet and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - iPTMnet\n   - PubMed\n   - Phosphorylation\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: fruitfly_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_proteoform_phosphorylation_sites_iptmnet.csv\n   Output Subdomain\n      Name: fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      Name: fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"783\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"233\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"77\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"212\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"233\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"233\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"783\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.csv"
}