{
    "bcoid": "GLY_000650",
    "title": "Fruitfly Protein PTM Annotation (UniProtKB)",
    "description": "The Fruitfly Protein PTM Annotation (UniProtKB) dataset contains fruitfly [taxid:7227] PTM annotations ...",
    "filename_list": "fruitfly_protein_ptm_annotation_uniprotkb.csv",
    "filename": "fruitfly_protein_ptm_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "PTM annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P40797-1...",
                "protein_xref..."
            ],
            [
                "P40797-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "ptm_annotation"
                }
            ],
            [
                "P40797-1",
                "protein_xref_uniprotkb",
                "P40797",
                "ECO_0000269",
                "Ubiquitinated by park, leading to its degradation by the proteasome."
            ],
            [
                "P40797-1",
                "protein_xref_pubmed",
                "17456438",
                "ECO_0000269",
                "Ubiquitinated by park, leading to its degradation by the proteasome."
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Protein PTM Annotation (UniProtKB)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2022-08-31T10:58:38.192589\n\nModified on\n   - 2024-05-17T11:24:07.955Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Protein PTM Annotation (UniProtKB) dataset contains fruitfly [taxid:7227] PTM annotations for UniProtKB canonical accessions. The annotation is the curated statements of mainly about glycosylation and phosphorylation. If you use this dataset please give proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - ptm annotation\n   - glycosylation\n   - phosphorylation\n\n   Pipeline Steps\n   - Step-1: The script extracts the ptm annotation strings from the triplestore for the UniProtKB canonical sequnces asnd extracts as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-drosophila-melanogaster.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_09_19/uniprot-proteome-drosophila-melanogaster.nt\n   Output Subdomain\n      Name: fruitfly_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_protein_ptm_annotation_uniprotkb.csv\n      Name: fruitfly_protein_ptm_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_protein_ptm_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"242\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"2\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"569\"\n      Name: \"eco_id\"\n     Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n      Unique Values: \"3\"\n      Name: \"ptm_annotation\"\n     Description: \"The Post Translational Modifiaction (PTM) annotation in UniProtKB that provides more context and description about the PTMs occuring on a proein\"\n      Unique Values: \"242\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/fruitfly_protein_ptm_annotation_uniprotkb.csv"
}