{
    "bcoid": "GLY_000622",
    "title": "NCBI PubMed LinkOuts",
    "description": "This dataset contains NCBI PubMed IDs associated with all of GlyGen's proteins and glycans with their ...",
    "filename_list": "protein_ncbi_pubmed_linkouts_one.csv, protein_ncbi_pubmed_linkouts_two.csv, protein_ncbi_pubmed_linkouts_three.csv",
    "filename": "protein_ncbi_pubmed_linkouts_one.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Protein"
        ],
        "tag": [
            "NCBI PubMed Linkout"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Sus scrofa",
            "Rattus",
            "Homo sapiens",
            "Mus musculus",
            "Saccharomyces cerevisiae s288c",
            "Drosophila melanogaster",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Dictyostelium discoideum",
            "Hepatitis C virus (isolate H77)",
            "Severe acute respiratory syndrome-related coronavirus",
            "Gallus gallus"
        ]
    },
    "minitable": {
        "content": [
            [
                "10227...",
                "PubMed..."
            ],
            [
                "10227...",
                "PubMed..."
            ]
        ],
        "headers": [
            "ProviderId...",
            "Database..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "ProviderId"
                },
                {
                    "type": "string",
                    "label": "Database"
                },
                {
                    "type": "string",
                    "label": "UID"
                },
                {
                    "type": "string",
                    "label": "URL"
                },
                {
                    "type": "string",
                    "label": "IconUrl"
                },
                {
                    "type": "string",
                    "label": "UrlName"
                },
                {
                    "type": "string",
                    "label": "SubjectType"
                },
                {
                    "type": "string",
                    "label": "Attribute"
                }
            ],
            [
                "10227",
                "PubMed",
                "36574644",
                "https://glygen.org/publication/PubMed/36574644/",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "PubMed",
                "33930332",
                "https://glygen.org/publication/PubMed/33930332/",
                "",
                "",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - NCBI PubMed LinkOuts\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2022-03-28T16:49:07.908809\n\nModified on\n   - 2024-06-03T22:51:40.867Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - This dataset contains NCBI PubMed IDs associated with all of GlyGen's proteins and glycans with their corresponding GlyGen publication detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID. The dataset is for all GlyGen's organisms and the output file is split into three files.\n\nDescription Domain\n   Keywords\n   - NCBI PubMed\n   - LinkOut\n   - PMID\n\n   Pipeline Steps\n   - Step-1: The script loads the PubMed IDs from the input files associated with proteins and glycans in GlyGen and generates publication detail page URLs for corresponding proteins and glycans. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset that is split into three datasets\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: arabidopsis_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/arabidopsis_protein_citations_uniprotkb.csv\n      Name: chicken_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_citations_reactome.csv\n      Name: chicken_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_citations_refseq.csv\n      Name: chicken_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_citations_uniprotkb.csv\n      Name: dicty_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/dicty_protein_citations_uniprotkb.csv\n      Name: fruitfly_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_protein_citations_reactome.csv\n      Name: fruitfly_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_protein_citations_uniprotkb.csv\n      Name: hcv1a_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1a_protein_citations_uniprotkb.csv\n      Name: hcv1b_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1b_protein_citations_uniprotkb.csv\n      Name: human_protein_citations_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_biomarkers.csv\n      Name: human_protein_citations_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_matrixdb.csv\n      Name: human_protein_citations_mutation_germline.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_mutation_germline.csv\n      Name: human_protein_citations_mutation_literature.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_mutation_literature.csv\n      Name: human_protein_citations_mutation_somatic.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_mutation_somatic.csv\n      Name: human_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_reactome.csv\n      Name: human_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_refseq.csv\n      Name: human_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_uniprotkb.csv\n      Name: mouse_protein_citations_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_protein_citations_matrixdb.csv\n      Name: mouse_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_protein_citations_refseq.csv\n      Name: mouse_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_protein_citations_uniprotkb.csv\n      Name: pig_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/pig_protein_citations_refseq.csv\n      Name: pig_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/pig_protein_citations_uniprotkb.csv\n      Name: rat_protein_citations_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_protein_citations_matrixdb.csv\n      Name: rat_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_protein_citations_refseq.csv\n      Name: rat_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_protein_citations_uniprotkb.csv\n      Name: sarscov1_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/sarscov1_protein_citations_uniprotkb.csv\n      Name: sarscov2_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/sarscov2_protein_citations_uniprotkb.csv\n      Name: yeast_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/yeast_protein_citations_uniprotkb.csv\n      Name: arabidopsis_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/arabidopsis_protein_citations_uniprotkb.csv\n      Name: chicken_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_citations_reactome.csv\n      Name: chicken_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_citations_refseq.csv\n      Name: chicken_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_citations_uniprotkb.csv\n      Name: dicty_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/dicty_protein_citations_uniprotkb.csv\n      Name: fruitfly_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_protein_citations_reactome.csv\n      Name: fruitfly_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_protein_citations_uniprotkb.csv\n      Name: hcv1a_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1a_protein_citations_uniprotkb.csv\n      Name: hcv1b_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1b_protein_citations_uniprotkb.csv\n      Name: human_protein_citations_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_biomarkers.csv\n      Name: human_protein_citations_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_matrixdb.csv\n      Name: human_protein_citations_mutation_germline.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_mutation_germline.csv\n      Name: human_protein_citations_mutation_literature.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_mutation_literature.csv\n      Name: human_protein_citations_mutation_somatic.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_mutation_somatic.csv\n      Name: human_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_reactome.csv\n      Name: human_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_refseq.csv\n      Name: human_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_uniprotkb.csv\n      Name: mouse_protein_citations_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_protein_citations_matrixdb.csv\n      Name: mouse_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_protein_citations_refseq.csv\n      Name: mouse_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_protein_citations_uniprotkb.csv\n      Name: pig_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/pig_protein_citations_refseq.csv\n      Name: pig_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/pig_protein_citations_uniprotkb.csv\n      Name: rat_protein_citations_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_protein_citations_matrixdb.csv\n      Name: rat_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_protein_citations_refseq.csv\n      Name: rat_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_protein_citations_uniprotkb.csv\n      Name: sarscov1_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/sarscov1_protein_citations_uniprotkb.csv\n      Name: sarscov2_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/sarscov2_protein_citations_uniprotkb.csv\n      Name: yeast_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/yeast_protein_citations_uniprotkb.csv\n      Name: arabidopsis_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/arabidopsis_protein_citations_uniprotkb.csv\n      Name: chicken_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_citations_reactome.csv\n      Name: chicken_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_citations_refseq.csv\n      Name: chicken_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_citations_uniprotkb.csv\n      Name: dicty_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/dicty_protein_citations_uniprotkb.csv\n      Name: fruitfly_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_protein_citations_reactome.csv\n      Name: fruitfly_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_protein_citations_uniprotkb.csv\n      Name: hcv1a_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1a_protein_citations_uniprotkb.csv\n      Name: hcv1b_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1b_protein_citations_uniprotkb.csv\n      Name: human_protein_citations_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_biomarkers.csv\n      Name: human_protein_citations_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_matrixdb.csv\n      Name: human_protein_citations_mutation_germline.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_mutation_germline.csv\n      Name: human_protein_citations_mutation_literature.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_mutation_literature.csv\n      Name: human_protein_citations_mutation_somatic.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_mutation_somatic.csv\n      Name: human_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_reactome.csv\n      Name: human_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_refseq.csv\n      Name: human_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_citations_uniprotkb.csv\n      Name: mouse_protein_citations_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_protein_citations_matrixdb.csv\n      Name: mouse_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_protein_citations_refseq.csv\n      Name: mouse_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/mouse_protein_citations_uniprotkb.csv\n      Name: pig_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/pig_protein_citations_refseq.csv\n      Name: pig_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/pig_protein_citations_uniprotkb.csv\n      Name: rat_protein_citations_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_protein_citations_matrixdb.csv\n      Name: rat_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_protein_citations_refseq.csv\n      Name: rat_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_protein_citations_uniprotkb.csv\n      Name: sarscov1_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/sarscov1_protein_citations_uniprotkb.csv\n      Name: sarscov2_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/sarscov2_protein_citations_uniprotkb.csv\n      Name: yeast_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/yeast_protein_citations_uniprotkb.csv\n   Output Subdomain\n      Name: protein_ncbi_pubmed_linkouts_one.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/protein_ncbi_pubmed_linkouts_one.csv\n      Name: protein_ncbi_pubmed_linkouts_two.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/protein_ncbi_pubmed_linkouts_two.csv\n      Name: protein_ncbi_pubmed_linkouts_three.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/protein_ncbi_pubmed_linkouts_three.csv\n      Name: protein_ncbi_pubmed_linkouts_one.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/protein_ncbi_pubmed_linkouts_one.stat.csv\n\nFields\n      Name: \"ProviderId\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"Database\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"UID\"\n     Description: \"NA\"\n      Unique Values: \"85613\"\n      Name: \"URL\"\n     Description: \"NA\"\n      Unique Values: \"85613\"\n      Name: \"IconUrl\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"UrlName\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"SubjectType\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"Attribute\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: protein_ncbi_pubmed_linkouts_two.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/protein_ncbi_pubmed_linkouts_two.stat.csv\n\nFields\n      Name: \"ProviderId\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"Database\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"UID\"\n     Description: \"NA\"\n      Unique Values: \"85613\"\n      Name: \"URL\"\n     Description: \"NA\"\n      Unique Values: \"85613\"\n      Name: \"IconUrl\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"UrlName\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"SubjectType\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"Attribute\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: protein_ncbi_pubmed_linkouts_three.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/protein_ncbi_pubmed_linkouts_three.stat.csv\n\nFields\n      Name: \"ProviderId\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"Database\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"UID\"\n     Description: \"NA\"\n      Unique Values: \"85614\"\n      Name: \"URL\"\n     Description: \"NA\"\n      Unique Values: \"85614\"\n      Name: \"IconUrl\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"UrlName\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"SubjectType\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"Attribute\"\n     Description: \"NA\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/protein_ncbi_pubmed_linkouts_one.csv"
}