{
    "bcoid": "GLY_000617",
    "title": "Human Cancer Mutation Loss of Glycosylation",
    "description": "",
    "filename_list": "human_protein_mutation_cancer_glycosylation_loss.csv",
    "filename": "human_protein_mutation_cancer_glycosylation_loss.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Cancer Mutations Loss of Glycosylation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q7Z6E9-1...",
                "326..."
            ],
            [
                "Q685J3-1...",
                "4205..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "mut_pos..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "mut_pos"
                },
                {
                    "type": "string",
                    "label": "mut_ref_aa"
                },
                {
                    "type": "string",
                    "label": "mut_alt_aa"
                },
                {
                    "type": "string",
                    "label": "ref_motif"
                },
                {
                    "type": "string",
                    "label": "alt_motif"
                },
                {
                    "type": "string",
                    "label": "do_id"
                },
                {
                    "type": "string",
                    "label": "do_name"
                },
                {
                    "type": "string",
                    "label": "mut_flags_score"
                },
                {
                    "type": "string",
                    "label": "mut_flags"
                },
                {
                    "type": "string",
                    "label": "mut_source"
                },
                {
                    "type": "string",
                    "label": "gly_pos"
                },
                {
                    "type": "string",
                    "label": "gly_ref_aa"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "gly_xref_key"
                },
                {
                    "type": "string",
                    "label": "gly_xref_id"
                },
                {
                    "type": "string",
                    "label": "gly_flags_score"
                },
                {
                    "type": "string",
                    "label": "gly_source"
                }
            ],
            [
                "Q7Z6E9-1",
                "326",
                "T",
                "A",
                "NET",
                "NEA",
                "363",
                "DOID:363 / uterine cancer",
                "passed",
                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
                "biomuta",
                "324",
                "N",
                "G80920RR",
                "protein_xref_doi",
                "10.1101/2023.09.13.557529",
                "1",
                "embl"
            ],
            [
                "Q685J3-1",
                "4205",
                "N",
                "K",
                "NHS",
                "KHS",
                "9256",
                "DOID:9256 / colorectal cancer",
                "passed",
                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NHS->KHS).",
                "biomuta",
                "4205",
                "N",
                "",
                "protein_xref_uniprotkb_gly",
                "Q685J3",
                "0",
                "uniprotkb"
            ]
        ]
    },
    "readme": "Name\n   - Human Cancer Mutation Loss of Glycosylation\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2021-10-15T15:32:16.971706\n\nModified on\n   - 2024-05-17T11:24:06.720Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_masterlist.csv\n      Name: human_protein_mutation_cancer.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_mutation_cancer.csv\n      Name: aadict.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/misc/aadict.csv\n   Output Subdomain\n      Name: human_protein_mutation_cancer_glycosylation_loss.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.csv\n      Name: human_protein_mutation_cancer_glycosylation_loss.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"79\"\n      Name: \"mut_pos\"\n     Description: \"\"\n      Unique Values: \"80\"\n      Name: \"mut_ref_aa\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"mut_alt_aa\"\n     Description: \"\"\n      Unique Values: \"14\"\n      Name: \"ref_motif\"\n     Description: \"Reference motif\"\n      Unique Values: \"30\"\n      Name: \"alt_motif\"\n     Description: \"Altered motif\"\n      Unique Values: \"69\"\n      Name: \"do_id\"\n     Description: \"Disease Ontology identifier\"\n      Unique Values: \"16\"\n      Name: \"do_name\"\n     Description: \"Disease Ontology term or name for the disease assigned to the Disease Ontology identifier\"\n      Unique Values: \"16\"\n      Name: \"mut_flags_score\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"mut_flags\"\n     Description: \"\"\n      Unique Values: \"72\"\n      Name: \"mut_source\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"gly_pos\"\n     Description: \"\"\n      Unique Values: \"76\"\n      Name: \"gly_ref_aa\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"saccharide\"\n     Description: \"Sugar\"\n      Unique Values: \"88\"\n      Name: \"gly_xref_key\"\n     Description: \"\"\n      Unique Values: \"6\"\n      Name: \"gly_xref_id\"\n     Description: \"\"\n      Unique Values: \"132\"\n      Name: \"gly_flags_score\"\n     Description: \"\"\n      Unique Values: \"2\"\n      Name: \"gly_source\"\n     Description: \"\"\n      Unique Values: \"9\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.csv"
}