{
    "bcoid": "GLY_000569",
    "title": "Rat Proteoform Phosphorylation Citations (iPTMnet)",
    "description": "The Rat Proteoform Citations (iPTMNet) contains Rattus norvegicus [taxid:10116] publication information ...",
    "filename_list": "rat_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filename": "rat_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P08050-1...",
                "Tyrosine pho..."
            ],
            [
                "P08483-1...",
                "CaMKIIalpha ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P08050-1",
                "Tyrosine phosphorylation of connexin 43 by v-Src is mediated by SH2 and SH3 domain interactions.",
                "The Journal of biological chemistry",
                "1997-09-05",
                "Kanemitsu M Y, Loo L W, Simon S, Lau A F, Eckhart W",
                "protein_xref_pubmed",
                "9278444",
                "protein_xref_iptmnet",
                "P08050"
            ],
            [
                "P08483-1",
                "CaMKIIalpha interacts with M4 muscarinic receptors to control receptor and psychomotor function.",
                "The EMBO journal",
                "2010-06-16",
                "Guo Ming-Lei, Fibuch Eugene E, Liu Xian-Yu, Choe Eun Sang, Buch Shilpa, Mao Li-Min, Wang John Q",
                "protein_xref_pubmed",
                "20461055",
                "protein_xref_iptmnet",
                "P08483"
            ]
        ]
    },
    "readme": "Name\n   - Rat Proteoform Phosphorylation Citations (iPTMnet)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2021-06-03T17:35:01.843447\n\nModified on\n   - 2024-12-05T19:37:20.742Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Proteoform Citations (iPTMNet) contains Rattus norvegicus [taxid:10116] publication information of phosphorylated proteins from iPTMnet. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from iPTMnet. If you use this dataset please provide proper attribution to iPTMnet and GlyGen.\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_proteoform_phosphorylation_sites_iptmnet.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      Name: rat_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/rat_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"2294\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"2546\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"504\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1615\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"2528\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2546\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"2303\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/rat_proteoform_citations_phosphorylation_sites_iptmnet.csv"
}