{
    "bcoid": "GLY_000556",
    "title": "Glycan Citations (GlycoMotif)",
    "description": "The dataset provides citations for the associated glycan (GlyTouCan Accession) from GlycoMotif (https://glycomotif.glyomics.org/). ...",
    "filename_list": "glycan_citations_motif.csv",
    "filename": "glycan_citations_motif.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "Citations(GlycoMotif)"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Homo sapiens",
            "Mus musculus",
            "Sus scrofa",
            "Rattus",
            "Drosophila melanogaster",
            "Sus scrofa domesticus",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Saccharomyces cerevisiae"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00055MO...",
                "Specific bin..."
            ],
            [
                "G00055MO...",
                "Immunohistoc..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "G00055MO",
                "Specific binding of anti-N-acetyllactosamine monoclonal antibody 1B2 to acute myeloid leukaemia cells.",
                "European journal of cancer (Oxford, England : 1990)",
                "1992",
                "Campos L, Portoukalian J, Bonnier S, Shi ZH, Calmard-Oriol P, Treille D, Guyotat D",
                "glycan_xref_pubmed",
                "1567687",
                "glycan_xref_motif",
                "GGM.000001"
            ],
            [
                "G00055MO",
                "Immunohistochemical localization of two monoclonal antibody-defined carbohydrate antigens during early murine embryogenesis.",
                "Developmental biology",
                "1983 Dec",
                "Fenderson BA, Hahnel AC, Eddy EM",
                "glycan_xref_pubmed",
                "6653876",
                "glycan_xref_motif",
                "GGM.000001"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Citations (GlycoMotif)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2021-03-16T15:44:18.145789\n\nModified on\n   - 2024-05-17T11:24:04.539Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu], Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides citations for the associated glycan (GlyTouCan Accession) from GlycoMotif (https://glycomotif.glyomics.org/). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLY_000281) and the associated PMIDs are derived from the Glycan Motif dataset (https://data.glygen.org/GLY_000283).\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - Citations\n   - Motif\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the associated PMIDs for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list. The MEDLINE format is used to add Journal, Author, Title detail associated with the publications. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_masterlist.csv\n      Name: glycan_motif.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_motif.csv\n   Output Subdomain\n      Name: glycan_citations_motif.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_citations_motif.csv\n      Name: glycan_citations_motif.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_citations_motif.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"116\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"119\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"49\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"117\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"118\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"119\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"121\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/glycan_citations_motif.csv"
}