{
    "bcoid": "GLY_000516",
    "title": "Human Proteoform Citations (Literature Mining)",
    "description": "The dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000481. ...",
    "filename_list": "human_proteoform_citations_glycosylation_sites_literature_mining.csv",
    "filename": "human_proteoform_citations_glycosylation_sites_literature_mining.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P10253-1...",
                "Identificati..."
            ],
            [
                "Q8N6C8-1...",
                "Glycosylatio..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "P10253-1",
                "Identification of a missense mutation in an adult-onset patient with glycogenosis type II expressing only one allele.",
                "DNA and cell biology",
                "1991 Nov",
                "Martiniuk F, Mehler M, Bodkin M, Tzall S, Hirschhorn K, Zhong N, Hirschhorn R",
                "protein_xref_pubmed",
                "1684505",
                "protein_xref_glygen_ds",
                "GLY_000481",
                ""
            ],
            [
                "Q8N6C8-1",
                "Glycosylation in a mammalian expression system is critical for the production of functionally active leukocyte immunoglobulin-like receptor A3 protein.",
                "The Journal of biological chemistry",
                "2013 Nov 15",
                "Lee TH, Mitchell A, Liu Lau S, An H, Rajeaskariah P, Wasinger V, Raftery M, Bryant K, Tedla N",
                "protein_xref_pubmed",
                "24085305",
                "protein_xref_glygen_ds",
                "GLY_000481",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Human Proteoform Citations (Literature Mining)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2020-06-26T15:29:27.375356\n\nModified on\n   - 2024-05-17T11:24:03.168Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000481. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - Literature\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_proteoform_glycosylation_sites_literature_mining.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_literature_mining.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_proteoform_citations_glycosylation_sites_literature_mining.csv\n      Name: human_proteoform_citations_glycosylation_sites_literature_mining.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_proteoform_citations_glycosylation_sites_literature_mining.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1141\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1818\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"542\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1424\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"1809\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1819\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/human_proteoform_citations_glycosylation_sites_literature_mining.csv"
}