{
    "bcoid": "GLY_000426",
    "title": "SARS-CoV2 Gene Symbols (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Gene Symbols (UniProtKB) dataset contains UniProtKB gene ...",
    "filename_list": "sarscov2_protein_genenames_uniprotkb.csv",
    "filename": "sarscov2_protein_genenames_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome coronavirus 2"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Gene Symbols"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0DTD2-1...",
                "..."
            ],
            [
                "P0DTD1-1...",
                "rep..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol_recommended"
                },
                {
                    "type": "string",
                    "label": "gene_symbol_alternative"
                },
                {
                    "type": "string",
                    "label": "orf_name"
                }
            ],
            [
                "P0DTD2-1",
                "",
                "",
                "9b"
            ],
            [
                "P0DTD1-1",
                "rep",
                "",
                "1a-1b"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Gene Symbols (UniProtKB)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2020-04-03T11:46:41.584409\n\nModified on\n   - 2024-06-03T21:12:31.133Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for Severe acute respiratory syndrome coronavirus 2  [taxid:2697049] proteins. It contains the recommended gene symbol, alternative gene symbol and ORF gene names assigned by the Gene Name Nomenclature  commitees. (for more info - https://www.uniprot.org/help/gene_name). If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - protein alternative name\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB gene symbols for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_09_19/uniprot-proteome-sars-cov-2.nt\n   Output Subdomain\n      Name: sarscov2_protein_genenames_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/sarscov2_protein_genenames_uniprotkb.csv\n      Name: sarscov2_protein_genenames_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/sarscov2_protein_genenames_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"13\"\n      Name: \"gene_symbol_recommended\"\n     Description: \"\"The official gene symbol recommended by the Gene Nomenclature Committees like HGNC\"\n      Unique Values: \"6\"\n      Name: \"gene_symbol_alternative\"\n     Description: \"The alternative gene symbols to the recommended recommeded gene symbols in UniProtKB\"\n      Unique Values: \"1\"\n      Name: \"orf_name\"\n     Description: \"\"The orf name as a gene name are the names that are temporarily attributed to an open reading frame (ORF) by a sequencing project. This name can be based on a cosmid numbering system\"\n      Unique Values: \"12\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/sarscov2_protein_genenames_uniprotkb.csv"
}