{
    "bcoid": "GLY_000356",
    "title": "HCV1b Protein Citations (UniProtKB)",
    "description": "The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Citations dataset contains publication ...",
    "filename_list": "hcv1b_protein_citations_uniprotkb.csv",
    "filename": "hcv1b_protein_citations_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Hepatitis c virus (isolate japanese)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P26662-1...",
                "NMR structur..."
            ],
            [
                "P26662-1...",
                "HCV NS5A hyp..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P26662-1",
                "NMR structure and ion channel activity of the p7 protein from hepatitis C virus.",
                "The Journal of biological chemistry",
                "2010-10-08",
                "Montserret Roland, Saint Nathalie, Vanbelle Christophe, Salvay Andr\u00e9s Gerardo, Simorre Jean-Pierre, Ebel Christine, Sapay Nicolas, Renisio Jean-Guillaume, B\u00f6ckmann Anja, Steinmann Eike, Pietschmann Thomas, Dubuisson Jean, Chipot Christophe, Penin Fran\u00e7ois",
                "protein_xref_pubmed",
                "20667830",
                "protein_xref_uniprotkb",
                "P26662"
            ],
            [
                "P26662-1",
                "HCV NS5A hyperphosphorylation is involved in viral translation modulation.",
                "Biochemical and biophysical research communications",
                "2019 Nov 26",
                "Kandangwa M, Liu Q",
                "protein_xref_pubmed",
                "31585734",
                "protein_xref_uniprotkb",
                "P26662"
            ]
        ]
    },
    "readme": "Name\n   - HCV1b Protein Citations (UniProtKB)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2020-03-13T14:12:07.407873\n\nModified on\n   - 2024-05-17T11:23:57.472Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Citations dataset contains publication information for Hepatitis C virus (isolate Japanese) [taxid:11116] UniProtKB accessions that includes PMID, journal name, date and author and title. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hcv1b_protein_function_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1b_protein_function_uniprotkb.csv\n      Name: hcv1b_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1b_protein_ptm_annotation_uniprotkb.csv\n      Name: hcv1b_protein_site_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1b_protein_site_annotation_uniprotkb.csv\n      Name: uniprot-proteome-hepatitis-c-virus-1b.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_09_19/uniprot-proteome-hepatitis-c-virus-1b.nt\n   Output Subdomain\n      Name: hcv1b_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1b_protein_citations_uniprotkb.csv\n      Name: hcv1b_protein_citations_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/hcv1b_protein_citations_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"43\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"19\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"38\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"43\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"43\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/hcv1b_protein_citations_uniprotkb.csv"
}