{
    "bcoid": "GLY_000291",
    "title": "Glycan Sequences SMILES Isomeric",
    "description": "The dataset provides the glycan sequences in SMILES Isomeric format for the associated glycans (GlyTouCan ...",
    "filename_list": "glycan_sequences_smiles_isomeric.csv",
    "filename": "glycan_sequences_smiles_isomeric.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "SMILES Isomeric sequence format"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Homo sapiens",
            "Mus musculus",
            "Rattus norvegicus",
            "Rattus",
            "Saccharomyces cerevisiae",
            "Drosophila melanogaster",
            "Severe acute respiratory syndrome coronavirus 2",
            "Dictyostelium discoideum",
            "Sus scrofa",
            "Sus scrofa domesticus"
        ]
    },
    "minitable": {
        "content": [
            [
                "G23980IF...",
                "168..."
            ],
            [
                "G38776RF...",
                "206..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "pubchem_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "pubchem_id"
                },
                {
                    "type": "string",
                    "label": "sequence_smiles_isomeric"
                }
            ],
            [
                "G23980IF",
                "168",
                "C(C1C(C(C(C(O1)O)O)O)OC2C(C(C(C(O2)COP(=O)(O)O)O)O)O)O"
            ],
            [
                "G38776RF",
                "206",
                "C(C1C(C(C(C(O1)O)O)O)O)O"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Sequences SMILES Isomeric\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2019-11-13T16:37:56.677676\n\nModified on\n   - 2024-05-17T11:23:55.214Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides the glycan sequences in SMILES Isomeric format for the associated glycans (GlyTouCan Accession) based on the GlyTouCan to PubChem CID mapping. The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://pubchem.ncbi.nlm.nih.gov/; https://glytoucan.org/\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - SMILES Isomeric\n\n   Pipeline Steps\n   - Step-1: A python script was generated to use the GlyTouCan Ac. to PubChem CID mapping file to extract the SMILES ISOMERIC sequence data from downloaded file from PubChem FTP\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_xref_pubchem.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_xref_pubchem.csv\n   Output Subdomain\n      Name: glycan_sequences_smiles_isomeric.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_sequences_smiles_isomeric.csv\n      Name: glycan_sequences_smiles_isomeric.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_sequences_smiles_isomeric.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"12138\"\n      Name: \"pubchem_id\"\n     Description: \"PubChem Substance and Compound database identifier\"\n      Unique Values: \"12138\"\n      Name: \"sequence_smiles_isomeric\"\n     Description: \"Glycan sequence in an SMILES isomeric format\"\n      Unique Values: \"12138\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/glycan_sequences_smiles_isomeric.csv"
}