{
    "bcoid": "GLY_000288",
    "title": "Glycan Sequences GlycoCT",
    "description": "The dataset provides the glycan sequences in GlycoCT format for the associated glycans (GlyTouCan Accession). ...",
    "filename_list": "glycan_sequences_glycoct.csv",
    "filename": "glycan_sequences_glycoct.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "GlycoCT sequence format"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Sus scrofa",
            "Rattus",
            "Homo sapiens",
            "Mus musculus",
            "Saccharomyces cerevisiae",
            "Drosophila melanogaster",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Sus scrofa domesticus",
            "Dictyostelium discoideum",
            "Hepatitis C virus (isolate H77)",
            "Severe acute respiratory syndrome-related coronavirus",
            "Hepacivirus C"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00002CF...",
                "RES 1b:x-dgl..."
            ],
            [
                "G00009BX...",
                "RES 1b:x-dgl..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "sequence_gly..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "sequence_glycoct"
                }
            ],
            [
                "G00002CF",
                "RES 1b:x-dglc-HEX-1:5 2b:x-dgal-HEX-1:5 3b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d 4s:n-glycolyl 5b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d 6s:n-glycolyl LIN 1:1o(-1+1)2d 2:2o(-1+2)3d 3:3d(5+1)4n 4:3o(-1+2)5d 5:5d(5+1)6n"
            ],
            [
                "G00009BX",
                "RES 1b:x-dglc-HEX-x:x 2s:n-acetyl 3b:b-dgal-HEX-1:5 4b:b-dglc-HEX-1:5 5s:n-acetyl 6b:b-dgal-HEX-1:5 7b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3o(3+1)4d 4:4d(2+1)5n 5:4o(4+1)6d 6:6o(2+1)7d"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Sequences GlycoCT\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2019-11-13T16:21:17.865259\n\nModified on\n   - 2024-05-17T11:23:55.097Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides the glycan sequences in GlycoCT format for the associated glycans (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLY_000281). Source database: https://glytoucan.org/\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - GlycoCT\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_masterlist.csv\n      Name: names.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2024_10_01/export/names.tsv\n      Name: subsumption.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2024_10_01/export/subsumption.tsv\n   Output Subdomain\n      Name: glycan_sequences_glycoct.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_sequences_glycoct.csv\n      Name: glycan_sequences_glycoct.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_sequences_glycoct.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"55752\"\n      Name: \"sequence_glycoct\"\n     Description: \"Glycan sequence in a GlycoCT format\"\n      Unique Values: \"55739\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/glycan_sequences_glycoct.csv"
}