{
    "bcoid": "GLY_000285",
    "title": "Glycan Citations (GlyTouCan)",
    "description": "The dataset provides citations for the associated glycan (GlyTouCan Accession) from GlyTouCan and UniCarbKB ...",
    "filename_list": "glycan_citations_glytoucan.csv",
    "filename": "glycan_citations_glytoucan.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "Citations"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Drosophila melanogaster",
            "Homo sapiens",
            "Mus musculus",
            "Sus scrofa domesticus",
            "Rattus norvegicus",
            "Rattus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Sus scrofa",
            "Dictyostelium discoideum",
            "Saccharomyces cerevisiae",
            "Hepatitis C virus (isolate H77)",
            "Severe acute respiratory syndrome-related coronavirus",
            "Hepacivirus C"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00027MO...",
                "Quantitation..."
            ],
            [
                "G00030VN...",
                "Characterisa..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "G00027MO",
                "Quantitation and isomeric structure analysis of free oligosaccharides present in the cytosol fraction of mouse liver: detection of a free disialobiantennary oligosaccharide and glucosylated oligomannosides.",
                "Journal of biochemistry",
                "1999 Nov",
                "Ohashi S, Iwai K, Mega T, Hase S",
                "glycan_xref_pubmed",
                "10544277",
                "glycan_xref_glytoucan",
                "G00027MO"
            ],
            [
                "G00030VN",
                "Characterisation by mass spectrometry and 1H-NMR of novel hexasaccharides among the acidic O-linked carbohydrate chains of bovine submaxillary mucin.",
                "European journal of biochemistry",
                "1992-08-01",
                "Chai W, Hounsell E F, Cashmore G C, Rosankiewicz J R, Feeney J, Lawson A M",
                "glycan_xref_pubmed",
                "1323463",
                "glycan_xref_glytoucan",
                "G00030VN"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Citations (GlyTouCan)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2019-11-13T13:26:29.074237\n\nModified on\n   - 2024-05-17T11:23:54.981Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides citations for the associated glycan (GlyTouCan Accession) from GlyTouCan and UniCarbKB database.The listed GlyTouCan Accessions are derived from the  GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/; http://www.unicarbkb.org/\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - Citations\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_masterlist.csv\n      Name: glycan_species.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_species.csv\n      Name: glycan_species_customized_neuac_neugc.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_species_customized_neuac_neugc.csv\n      Name: pubs.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2024_10_01/export/pubs.tsv\n   Output Subdomain\n      Name: glycan_citations_glytoucan.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_citations_glytoucan.csv\n      Name: glycan_citations_glytoucan.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_citations_glytoucan.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"3914\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"2583\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"534\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1820\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"2548\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2585\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"2\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"3884\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/glycan_citations_glytoucan.csv"
}