{
    "object_id": "https://biocomputeobject.org/GLY_000489/v-2.7.1",
    "spec_version": "1.3.0",
    "extension_domain": [
        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Severe acute respiratory syndrome-related coronavirus",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "diseases",
                        "category_name": "tag"
                    },
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                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "SARS-CoV1 Protein Diseases",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "name": "Luke Johnson",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "luke.johnson@email.gwu.edu"
            },
            {
                "name": "Urnisha Bhuiyan",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "sbhuiyan28@email.gwu.edu"
            },
            {
                "name": "Cyrus Au-Yeung",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "cyruschauyeung@gwu.edu"
            },
            {
                "name": "Kate Warner",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "k.warner1@gwu.edu"
            }
        ],
        "created": "2020-04-29T16:15:30.138920",
        "modified": "2024-05-17T11:24:02.454Z",
        "version": "v-2.7.1"
    },
    "description_domain": {
        "keywords": [
            "SARS (Severe Acute Respiratory Syndrome) ",
            "DOID",
            "SARS-CoV-1",
            "disease"
        ],
        "pipeline_steps": [
            {
                "name": "make-protein-dataset.py",
                "step_number": 1,
                "version": "",
                "input_list": [],
                "output_list": [],
                "prerequisite": [],
                "description": "The script extracts the UniProtKB canonical accessions, database name, database ID and DOID from the input file as a dataset in a csv format"
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
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                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py",
                    "filename": "make-protein-dataset.py"
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "param": "",
            "value": ""
        }
    ],
    "usability_domain": [
        "The SARS coronavirus (SARS-CoV-1) Protein Diseases dataset contains disease caused by sarscov1 virus [taxid:694009] which is SARS and is mapped to all UniProtKB canonical accessions. The dataset contains SARS (Severe Acute Respiratory Syndrome) disease ontology ID and GlyGen dataset ID. The input file for this dataset is compiled by GlyGen. If you use this dataset please give proper attribution to UniProtKB and GlyGen."
    ],
    "etag": "206944638b523f0ba1dffb03b106fc7b",
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "filename": "sarscov1_protein_disease_glygen.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.7.1/compiled/sarscov1_protein_disease_glygen.csv"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/sarscov1_protein_disease_glygen.csv",
                    "filename": "sarscov1_protein_disease_glygen.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/sarscov1_protein_disease_glygen.stat.csv",
                    "filename": "sarscov1_protein_disease_glygen.stat.csv"
                }
            }
        ]
    },
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {}
    }
}