{
    "object_id": "https://biocomputeobject.org/GLY_000258/v-2.7.1",
    "spec_version": "1.3.0",
    "extension_domain": [
        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_name": "species",
                        "category_value": "Mus musculus"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Homo sapiens"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Rattus norvegicus"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Saccharomyces cerevisiae S288C"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Drosophila melanogaster"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Severe acute respiratory syndrome coronavirus 2"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Severe acute respiratory syndrome-related coronavirus"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Hepatitis c virus (isolate h77)"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Hepatitis C virus (isolate Japanese)"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Homologs",
                        "category_name": "tag"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "Homolog Clusters",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "contribution": [
                    "contributedBy"
                ],
                "name": "Not Applicable"
            },
            {
                "name": "Luke Johnson",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "luke.johnson@email.gwu.edu"
            },
            {
                "name": "Urnisha Bhuiyan",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "sbhuiyan28@email.gwu.edu"
            },
            {
                "name": "Cyrus Au-Yeung",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "cyruschauyeung@gwu.edu"
            },
            {
                "name": "Kate Warner",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "k.warner1@gwu.edu"
            }
        ],
        "created": "2019-09-06T14:06:38.985197",
        "modified": "2024-05-17T11:23:53.977Z",
        "version": "v-2.7.1"
    },
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            "homologs",
            "orthologs",
            "MGI",
            "OMA"
        ],
        "pipeline_steps": [
            {
                "name": "make-species-agnostic-dataset.py",
                "step_number": 1,
                "input_list": [],
                "description": "The script extracts the human, mouse and rat homologs from the input files and using xref files, maps the identifiers to UniProtKB canonical accessions. ",
                "prerequisite": [],
                "output_list": []
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
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                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
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                    "filename": "make-species-agnostic-dataset.py"
                }
            }
        ]
    },
    "usability_domain": [
        "The Homolog Clusters dataset contains homologs of organisms present in GlyGen mapped to UniProtKB canonical accessions. The homologs data is downloaded from OMA browser and MGI. If you use this dataset please provide proper attribution to MGI, OMA Browser and GlyGen. "
    ],
    "etag": "ba8ea4902dfccdeab45fe2dfad4c7a08",
    "io_domain": {
        "output_subdomain": [
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                    "filename": "protein_homolog_clusters.csv"
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            {
                "mediatype": "csv",
                "uri": {
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                }
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        ],
        "input_subdomain": [
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                "uri": {
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                }
            },
            {
                "uri": {
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                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/arabidopsis_protein_masterlist.csv"
                }
            },
            {
                "uri": {
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                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/arabidopsis_protein_transcriptlocus.csv"
                }
            },
            {
                "uri": {
                    "filename": "arabidopsis_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/arabidopsis_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "arabidopsis_protein_xref_oma.csv",
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                }
            },
            {
                "uri": {
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            },
            {
                "uri": {
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            },
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            },
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            },
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            },
            {
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            },
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                "uri": {
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            },
            {
                "uri": {
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                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/fruitfly_protein_masterlist.csv"
                }
            },
            {
                "uri": {
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            },
            {
                "uri": {
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                "uri": {
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                "uri": {
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                }
            },
            {
                "uri": {
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            },
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            },
            {
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            },
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                "uri": {
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            },
            {
                "uri": {
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            },
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                "uri": {
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            },
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            },
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            },
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}