{ "uniprot_canonical_ac": "A0A1P8APF4-1", "uniprot_ac": "A0A1P8APF4", "uniprot_id": "A0A1P8APF4_ARATH", "mass": { "chemical_mass": 42116.0, "monoisotopic_mass": 42116.0 }, "refseq": { "ac": "NP_001320976", "name": "Transcription factor IIA, alpha/beta subunit", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001320976" }, "gene_names": [ { "name": "TFIIA-L", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4", "id": "A0A1P8APF4" }, { "name": "F22G5.14; F22G5_14", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001320976", "id": "NP_001320976" }, { "name": "F22G5.14", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4", "id": "A0A1P8APF4" }, { "name": "F22G5_14", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4", "id": "A0A1P8APF4" } ], "protein_names": [ { "name": "Transcription factor IIA, alpha/beta subunit", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001320976", "id": "NP_001320976" }, { "name": "Transcription factor IIA, alpha/beta subunit", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprotkb/A0A1P8APF4/entry#names_and_taxonomy", "id": "A0A1P8APF4" } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "A0A1P8APF4", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4", "locus": {} } ], "crossref": [ { "id": "A0A1P8APF4", "url": "https://alphafold.ebi.ac.uk/entry/A0A1P8APF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G07480", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G07480", "database": "Araport", "categories": [ "Organism-specific", "Protein" ] }, { "id": "cd07976", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07976", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "837262", "url": "https://www.ncbi.nlm.nih.gov/gene/837262", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G07480", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G07480", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EVCDASQ", "url": "https://omabrowser.org/oma/group/EVCDASQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8APF4", "url": "https://www.orthodb.org/?gene=A0A1P8APF4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12694", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12694", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12694:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12694:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03153", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03153", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "NP_001320976", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001320976", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G07480", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G07480", "database": "TAIR", "categories": [ "Organism-specific", "Protein" ] }, { "id": "A0A1P8APF4", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8APF4-1", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O49349", "url": "https://www.uniprot.org/uniprot/O49349", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O49349-1", "url": "https://www.uniprot.org/uniprot/O49349-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTTTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQKPTPGGPLTHDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKARPSPYMPPPSPWTNPRLDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECDAFRITSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQGPSEEFNEARTPAPNEIQTSTPVAVQNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKVICASQIRLELFW", "length": 381, "header": "tr|A0A1P8APF4-1|A0A1P8APF4_ARATH Isoform 1 of Transcription factor IIA, alpha/beta subunit OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=A0A1P8APF4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8APF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8APF4/entry#A0A1P8APF4-1", "sequence": { "sequence": "MGTTTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQKPTPGGPLTHDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKARPSPYMPPPSPWTNPRLDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECDAFRITSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQGPSEEFNEARTPAPNEIQTSTPVAVQNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKVICASQIRLELFW", "length": 381, "header": "tr|A0A1P8APF4-1|A0A1P8APF4_ARATH Isoform 1 of Transcription factor IIA, alpha/beta subunit OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=A0A1P8APF4-1" }, "locus": { "chromosome": "1", "start_pos": 2299215, "end_pos": 2296771, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G07480.3", "url": "https://www.ensemblgenomes.org/id/AT1G07480.3" }, { "database": "Ensembl Peptide", "id": "AT1G07480.3", "url": "https://www.ensemblgenomes.org/id/AT1G07480.3" } ] } }, { "isoform_ac": "O49349-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8APF4/entry#O49349-1", "sequence": { "sequence": "MGTTTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQKPTPGGPLTHDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKARPSPYMPPPSPWTNPRLDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECDAFRITSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQGPSEEFNEARTPAPNEIQTSTPVAVQNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF", "length": 375, "header": "tr|O49349-1|O49349_ARATH Computationally mapped isoform of Transcription factor IIA, alpha/beta subunit OS=Arabidopsis thaliana OX=3702 GN=TFIIA-L PE=1 SV=1 CANONICAL=A0A1P8APF4-1" }, "locus": { "chromosome": "1", "start_pos": 2299215, "end_pos": 2296709, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G07480.1", "url": "https://www.ensemblgenomes.org/id/AT1G07480.1" }, { "database": "Ensembl Peptide", "id": "AT1G07480.1", "url": "https://www.ensemblgenomes.org/id/AT1G07480.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool": "isoglyp", "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "start_pos": 129, "start_aa": "T", "end_pos": 129, "end_aa": "T", "residue": "Thr", "site_lbl": "Thr129", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "00000000000000001000.00000000001000.1.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool": "isoglyp", "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "start_pos": 67, "start_aa": "T", "end_pos": 67, "end_aa": "T", "residue": "Thr", "site_lbl": "Thr67", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ], "filter_code": "00000000000000001000.00000000001000.1.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Characterization and functional analysis of Arabidopsis TFIIA reveal that the evolutionarily unconserved region of the large subunit has a transcription activation domain.", "journal": "Plant Mol. Biol.", "date": "1999", "authors": "Li Y F, Le Gourierrec J, Torki M, Kim Y J, Guerineau F, Zhou D X", "evidence": [ { "database": "UniProtKB", "id": "O49349", "url": "https://www.uniprot.org/uniprot/O49349" } ], "reference": [ { "type": "PubMed", "id": "10092179", "url": "https://glygen.org/publication/PubMed/10092179" } ] }, { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8APF4", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs.", "journal": "DNA Res.", "date": "2009", "authors": "Iida Kei, Fukami-Kobayashi Kaoru, Toyoda Atsushi, Sakaki Yoshiyuki, Kobayashi Masatomo, Seki Motoaki, Shinozaki Kazuo", "evidence": [ { "database": "UniProtKB", "id": "O49349", "url": "https://www.uniprot.org/uniprot/O49349" } ], "reference": [ { "type": "PubMed", "id": "19423640", "url": "https://glygen.org/publication/PubMed/19423640" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8APF4", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G07480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G07480", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A1IIE6-1", "protein_name": "General transcription facter IIA subunit 1 variant 1", "gene_name": "GTF2A1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASSTNTNPVPKLYRSVIEDVINDVREVFLDEGVDEQVLMELKTLWENKLMQSKAVDGFHSEEQQLLLQVQQQQQQQQQQQHHHHHHHTQPQPQQTVQQQTQPQQVLIPASQQAPQQQVIVPDSKLIPHMNASGMSAAATAATLALPAGVTPVQQILTNSGQILQVVRTANGAQYIIQPQQPVVLQQQVIPQMQPGGVQAPVIQQVLAPIPGGIPQQTGVIIQPQQILFTGNKTQVIPTTVAAPTPAQAQIPAAGQQQPQQQQAQPQAPLVLQVDGAGDTSSEEEEDEEEDYDDDEEEDKEKDGGEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKAIGDAEW", "length": 377 }, "evidence": [ { "id": "A0A1P8APF4", "url": "https://omabrowser.org/oma/group/A0A1P8APF4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1SE01-1", "protein_name": "Ral transcription factor IIA subunit 1", "gene_name": "GTF2A1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQLLLQVQQQHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQAAAPQVIVPDSKLIQHMNASNMSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQQSVVLQQQVIPQMQPGGVQAPVIQQVLTPLPGGISPQTGVIIQPQQILFTGNKTQVIPTTVAAPTPAQAQIPATGQQQPQAQPAQQQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW", "length": 376 }, "evidence": [ { "id": "A0A1P8APF4", "url": "https://omabrowser.org/oma/group/A0A1P8APF4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "O08949-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "Gtf2a1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQLLLQVQQQHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHMNASSITSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQQSVVLQQQVIPQMQPGGVQAPVIQQVLAPLPGGISPQTGVIIQPQQILFTGNKTQVIPTTVAAPTPAQAQIPAAGQQQPQAQPAQQQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW", "length": 377 }, "evidence": [ { "id": "A0A1P8APF4", "url": "https://omabrowser.org/oma/group/A0A1P8APF4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P52654-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "TfIIA-L", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAVELSPDSGDGSHPPPIVANNPKSHKAANAKAKKAAAATAVTSHQHIGGNSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASMMQKQQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQVPASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQKTLAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAEEEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW", "length": 366 }, "evidence": [ { "id": "A0A1P8APF4", "url": "https://omabrowser.org/oma/group/A0A1P8APF4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQLLLQVQQQHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHMNASNMSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQQSVVLQQQVIPQMQPGGVQAPVIQQVLAPLPGGISPQTGVIIQPQQILFTGNKTQVIPTTVAAPTPAQAQITATGQQQPQAQPAQTQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW", "length": 376 }, "evidence": [ { "id": "A0A1P8APF4", "url": "https://omabrowser.org/oma/group/A0A1P8APF4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99PM3-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "Gtf2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQLLLQVQQQHQPQQQQHHHHHHQHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLLQHMNASSITSAAATAATLALPAGVTPVQQLLTNSGQLLQVVRAANGAQYILQPQQSVVLQQQVIPQMQPGGVQAPVIQQVLAPLPGGISPQTGVIIQPQQILFTGNKTQVIPTTVAAPAPAQAPMPAAGQQQPQAQPAQQQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW", "length": 378 }, "evidence": [ { "id": "A0A1P8APF4", "url": "https://omabrowser.org/oma/group/A0A1P8APF4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "transcription by RNA polymerase II", "id": "GO:0006366", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006366", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8APF4", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4" } ], "pmid": "" }, { "name": "transcription initiation at RNA polymerase II promoter", "id": "GO:0006367", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006367", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8APF4", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "transcription factor TFIIA complex", "id": "GO:0005672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005672", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8APF4", "url": "https://www.uniprot.org/uniprot/A0A1P8APF4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A1P8APF4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 381, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A1P8APF4-F1.pdb" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 67, 129 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 } ] }, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "prediction_tool", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", 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