{
    "uniprot_canonical_ac": "A0A0G2JFN0-1",
    "uniprot_ac": "A0A0G2JFN0",
    "uniprot_id": "A0A0G2JFN0_MOUSE",
    "mass": {
        "chemical_mass": 2081.0,
        "monoisotopic_mass": 2081.0
    },
    "refseq": {},
    "gene_names": [
        {
            "name": "Traj42",
            "resource": "UniProtKB",
            "type": "recommended",
            "url": "https://www.uniprot.org/uniprot/A0A0G2JFN0",
            "id": "A0A0G2JFN0"
        }
    ],
    "protein_names": [
        {
            "name": "T cell receptor alpha joining 42",
            "resource": "UniProtKB",
            "type": "synonym",
            "url": "https://www.uniprot.org/uniprotkb/A0A0G2JFN0/entry#names_and_taxonomy",
            "id": "A0A0G2JFN0"
        }
    ],
    "function": [],
    "disease": [],
    "snv": [
        {
            "evidence": [
                {
                    "id": "rs3551125778",
                    "database": "dbSNP",
                    "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs3551125778"
                }
            ],
            "glycoeffect": [
                "o-glyco-site-loss"
            ],
            "start_pos": 5,
            "end_pos": 5,
            "sequence_org": "S",
            "sequence_mut": "N",
            "comment": "Germline mutation passed 1 out of 1 filters: o-glyco-site-loss (S->N).",
            "chr_id": "14",
            "chr_pos": "54413243",
            "ref_nt": "A",
            "alt_nt": "null",
            "minor_allelic_frequency": "",
            "site_lbl": "S5",
            "keywords": [
                "ebi",
                "germline"
            ]
        }
    ],
    "mutagenesis": [],
    "expression_tissue": [],
    "expression_disease": [],
    "species": [
        {
            "name": "Mus musculus",
            "taxid": 10090,
            "evidence": [
                {
                    "database": "UniProtKB",
                    "id": "A0A0G2JFN0",
                    "url": "https://www.uniprot.org/uniprot/A0A0G2JFN0"
                }
            ],
            "common_name": "Mouse",
            "glygen_name": "Mouse",
            "reference_species": "Mus musculus [10090]"
        }
    ],
    "gene": [
        {
            "name": "Traj42",
            "url": "https://www.uniprot.org/uniprot/A0A0G2JFN0",
            "locus": {
                "chromosome": "14",
                "start_pos": 54413293,
                "end_pos": 54413230,
                "strand": "-",
                "evidence": [
                    {
                        "database": "Ensembl Gene",
                        "id": "ENSMUSG00000076888",
                        "url": "https://www.ensembl.org/id/ENSMUSG00000076888"
                    }
                ]
            }
        }
    ],
    "crossref": [
        {
            "id": "A0A0G2JFN0",
            "url": "https://alphafold.ebi.ac.uk/entry/A0A0G2JFN0",
            "database": "AlphaFoldDB",
            "categories": []
        },
        {
            "id": "ENSMUSG00000076888",
            "url": "https://bgee.org/?page=gene&gene_id=ENSMUSG00000076888",
            "database": "Bgee",
            "categories": [
                "Gene Expression"
            ]
        },
        {
            "id": "4439846",
            "url": "http://www.informatics.jax.org/marker/MGI:4439846",
            "database": "MGI",
            "categories": [
                "Organism-specific"
            ]
        },
        {
            "id": "A0A0G2JFN0",
            "url": "https://oglcnac.org/atlas/detail/A0A0G2JFN0",
            "database": "O-GlcNAc Atlas",
            "categories": [
                "Glycoproteomics"
            ]
        },
        {
            "id": "A0A0G2JFN0",
            "url": "https://www.uniprot.org/uniprot/A0A0G2JFN0",
            "database": "UniProtKB",
            "categories": [
                "Protein"
            ]
        },
        {
            "id": "A0A0G2JFN0-1",
            "url": "https://www.uniprot.org/uniprot/A0A0G2JFN0-1",
            "database": "UniProtKB",
            "categories": [
                "Protein"
            ]
        }
    ],
    "sequence": {
        "sequence": "NSGGSNAKLTFGKGTKLSVKS",
        "length": 21,
        "header": "tr|A0A0G2JFN0-1|A0A0G2JFN0_MOUSE Isoform 1 of T cell receptor alpha joining 42  OS=Mus musculus OX=10090 GN=Traj42 PE=4 SV=1 CANONICAL=A0A0G2JFN0-1"
    },
    "isoforms": [
        {
            "isoform_ac": "A0A0G2JFN0-1",
            "url": "https://www.uniprot.org/uniprotkb/A0A0G2JFN0/entry#A0A0G2JFN0-1",
            "sequence": {
                "sequence": "NSGGSNAKLTFGKGTKLSVKS",
                "length": 21,
                "header": "tr|A0A0G2JFN0-1|A0A0G2JFN0_MOUSE Isoform 1 of T cell receptor alpha joining 42  OS=Mus musculus OX=10090 GN=Traj42 PE=4 SV=1 CANONICAL=A0A0G2JFN0-1"
            },
            "locus": {
                "chromosome": "14",
                "start_pos": 54413292,
                "end_pos": 54413230,
                "strand": "-",
                "evidence": [
                    {
                        "database": "Ensembl Transcript",
                        "id": "ENSMUST00000103700.2",
                        "url": "https://www.ensembl.org/id/ENSMUST00000103700.2"
                    },
                    {
                        "database": "Ensembl Peptide",
                        "id": "ENSMUSP00000143239.2",
                        "url": "https://www.ensembl.org/id/ENSMUSP00000143239.2"
                    }
                ]
            }
        }
    ],
    "glycosylation": [
        {
            "glytoucan_ac": "G49108TO",
            "type": "O-linked",
            "subtype": "O-GlcNAcylation",
            "prediction_tool": "",
            "site_category": "reported_with_glycan",
            "site_category_dict": {
                "reported_with_glycan": true
            },
            "site_seq": "S",
            "relation": "attached",
            "comment": "O-GlcNAcylation",
            "start_pos": 2,
            "start_aa": "Ser",
            "end_pos": 2,
            "end_aa": "Ser",
            "residue": "Ser",
            "site_lbl": "Ser2",
            "evidence": [
                {
                    "id": "30059200",
                    "database": "PubMed",
                    "url": "https://glygen.org/publication/PubMed/30059200"
                },
                {
                    "id": "A0A0G2JFN0",
                    "database": "O-GlcNAc Atlas",
                    "url": "https://oglcnac.org/atlas/detail/A0A0G2JFN0"
                }
            ],
            "filter_code": "00000000000000010000.0000000.00000001000000.1000000.0100000000.11010000111101.00000.01000"
        },
        {
            "glytoucan_ac": "G49108TO",
            "type": "O-linked",
            "subtype": "O-GlcNAcylation",
            "prediction_tool": "",
            "site_category": "reported_with_glycan",
            "site_category_dict": {
                "reported_with_glycan": true
            },
            "site_seq": "S",
            "relation": "attached",
            "comment": "O-GlcNAcylation",
            "start_pos": 5,
            "start_aa": "Ser",
            "end_pos": 5,
            "end_aa": "Ser",
            "residue": "Ser",
            "site_lbl": "Ser5",
            "evidence": [
                {
                    "id": "30059200",
                    "database": "PubMed",
                    "url": "https://glygen.org/publication/PubMed/30059200"
                },
                {
                    "id": "A0A0G2JFN0",
                    "database": "O-GlcNAc Atlas",
                    "url": "https://oglcnac.org/atlas/detail/A0A0G2JFN0"
                }
            ],
            "filter_code": "00000000000000010000.0000000.00000001000000.1000000.0100000000.11010000111101.00000.01001"
        }
    ],
    "phosphorylation": [],
    "glycation": [],
    "keywords": [
        "glycoprotein",
        "glycoprotein_reported_with_glycan"
    ],
    "publication": [
        {
            "title": "Quantitative Profiling of Protein O-GlcNAcylation Sites by an Isotope-Tagged Cleavable Linker.",
            "journal": "ACS chemical biology",
            "date": "2018",
            "authors": "Qin K, Zhu Y, Qin W, Gao J, Shao X, Wang YL, Zhou W, Wang C, Chen X",
            "evidence": [
                {
                    "database": "O-GlcNAc Atlas",
                    "id": "A0A0G2JFN0",
                    "url": "https://oglcnac.org/atlas/detail/A0A0G2JFN0"
                }
            ],
            "reference": [
                {
                    "type": "PubMed",
                    "id": "30059200",
                    "url": "https://glygen.org/publication/PubMed/30059200"
                }
            ]
        }
    ],
    "pathway": [],
    "orthologs": [],
    "go_annotation": {},
    "pro_annotation": [],
    "site_annotation": [],
    "ptm_annotation": [],
    "interactions": [],
    "reactions": [],
    "reaction_participants": [],
    "reaction_enzymes": [],
    "biomarkers": [],
    "structures": [
        {
            "pdb_id": "AF-A0A0G2JFN0-F1",
            "pdb_chain": "global",
            "start_pos": 1,
            "end_pos": 21,
            "overlap": "1.0",
            "method": "AlphaFold",
            "type": "alphafold",
            "resolution": -1.0,
            "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A0G2JFN0-F1.pdb"
        }
    ],
    "synthesized_glycans": [],
    "enzyme_annotation": [],
    "cluster_types": [],
    "sequence_features": {
        "n_linked_sites": [],
        "o_linked_sites": [
            2,
            5
        ],
        "snv_sites": [
            5
        ],
        "glycation_sites": [],
        "phosphorylation_sites": [],
        "sequon_annotation_sites": []
    },
    "section_stats": [
        {
            "table_id": "glycosylation",
            "table_stats": [
                {
                    "field": "exact_sites",
                    "count": 2
                },
                {
                    "field": "exact_o_linked_sites",
                    "count": 2
                },
                {
                    "field": "exact_o_linked_glycan_sites",
                    "count": 2
                },
                {
                    "field": "exact_o_linked_glycans",
                    "count": 2
                },
                {
                    "field": "fuzzy_sites",
                    "count": 0
                }
            ],
            "sort_fields": [
                "glytoucan_ac",
                "type",
                "subtype",
                "prediction_tool",
                "site_category",
                "site_seq",
                "relation",
                "comment",
                "start_pos",
                "start_aa",
                "end_pos",
                "end_aa",
                "residue",
                "site_lbl"
            ]
        },
        {
            "table_id": "glycosylation_reported",
            "table_stats": [
                {
                    "field": "total",
                    "count": 0
                },
                {
                    "field": "total_sites",
                    "count": 0
                },
                {
                    "field": "n_linked_glycans",
                    "count": 0
                },
                {
                    "field": "n_linked_glycan_sites",
                    "count": 0
                },
                {
                    "field": "o_linked_glycans",
                    "count": 0
                },
                {
                    "field": "o_linked_glycan_sites",
                    "count": 0
                },
                {
                    "field": "n_linked_sites",
                    "count": 0
                },
                {
                    "field": "o_linked_sites",
                    "count": 0
                }
            ],
            "sort_fields": []
        },
        {
            "table_id": "glycosylation_reported_with_glycan",
            "table_stats": [
                {
                    "field": "exact_sites",
                    "count": 2
                },
                {
                    "field": "exact_o_linked_sites",
                    "count": 2
                },
                {
                    "field": "exact_o_linked_glycan_sites",
                    "count": 2
                },
                {
                    "field": "exact_o_linked_glycans",
                    "count": 2
                },
                {
                    "field": "fuzzy_sites",
                    "count": 0
                }
            ],
            "sort_fields": [
                "glytoucan_ac",
                "type",
                "subtype",
                "prediction_tool",
                "site_category",
                "site_seq",
                "relation",
                "comment",
                "start_pos",
                "start_aa",
                "end_pos",
                "end_aa",
                "residue",
                "site_lbl"
            ]
        },
        {
            "table_id": "glycosylation_predicted",
            "table_stats": [
                {
                    "field": "total",
                    "count": 0
                },
                {
                    "field": "total_sites",
                    "count": 0
                },
                {
                    "field": "n_linked_glycans",
                    "count": 0
                },
                {
                    "field": "n_linked_glycan_sites",
                    "count": 0
                },
                {
                    "field": "o_linked_glycans",
                    "count": 0
                },
                {
                    "field": "o_linked_glycan_sites",
                    "count": 0
                },
                {
                    "field": "n_linked_sites",
                    "count": 0
                },
                {
                    "field": "o_linked_sites",
                    "count": 0
                }
            ],
            "sort_fields": []
        },
        {
            "table_id": "glycosylation_automatic_literature_mining",
            "table_stats": [
                {
                    "field": "total",
                    "count": 0
                },
                {
                    "field": "total_sites",
                    "count": 0
                },
                {
                    "field": "n_linked_glycans",
                    "count": 0
                },
                {
                    "field": "n_linked_glycan_sites",
                    "count": 0
                },
                {
                    "field": "o_linked_glycans",
                    "count": 0
                },
                {
                    "field": "o_linked_glycan_sites",
                    "count": 0
                },
                {
                    "field": "n_linked_sites",
                    "count": 0
                },
                {
                    "field": "o_linked_sites",
                    "count": 0
                }
            ],
            "sort_fields": []
        },
        {
            "table_id": "phosphorylation",
            "table_stats": [
                {
                    "field": "total",
                    "count": 0
                },
                {
                    "field": "total_sites",
                    "count": 0
                }
            ],
            "sort_fields": []
        },
        {
            "table_id": "snv",
            "table_stats": [
                {
                    "field": "total",
                    "count": 1
                },
                {
                    "field": "total_sites",
                    "count": 1
                }
            ],
            "sort_fields": [
                "start_pos",
                "end_pos",
                "sequence_org",
                "sequence_mut",
                "comment",
                "chr_id",
                "chr_pos",
                "ref_nt",
                "alt_nt",
                "minor_allelic_frequency",
                "site_lbl"
            ]
        },
        {
            "table_id": "snv_disease",
            "table_stats": [
                {
                    "field": "total",
                    "count": 0
                },
                {
                    "field": "total_sites",
                    "count": 0
                }
            ],
            "sort_fields": []
        },
        {
            "table_id": "snv_non_disease",
            "table_stats": [
                {
                    "field": "total",
                    "count": 1
                },
                {
                    "field": "total_sites",
                    "count": 1
                }
            ],
            "sort_fields": [
                "start_pos",
                "end_pos",
                "sequence_org",
                "sequence_mut",
                "comment",
                "chr_id",
                "chr_pos",
                "ref_nt",
                "alt_nt",
                "minor_allelic_frequency",
                "site_lbl"
            ]
        },
        {
            "table_id": "publication",
            "table_stats": [
                {
                    "field": "total",
                    "count": 1
                }
            ],
            "sort_fields": [
                "title",
                "journal",
                "date",
                "authors"
            ]
        }
    ]
}
