{
  "bco_id": "http://data.glygen.org/GLY_000703",
  "checksum": "d02aa74f033af4b813d551b90dac666c",
  "bco_spec_version": "1.3",
  "provenance_domain": {
    "name": "Glycan Pathway GlycoTree",
    "version": "1.3.0",
    "created": "2022-09-14T12:37:04.198762",
    "modified": "2022-09-14T12:37:19.252204",
    "contributors": [
      {
        "affiliation": "The George Washington University",
        "contribution": [
          "createdBy"
        ],
        "name": "Karina Martinez",
        "email": "karinamartinez@gwu.edu"
      },
      {
        "affiliation": "The George Washington University",
        "contribution": [
          "createdBy"
        ],
        "name": "Jeet Vora",
        "email": "jeetvora@gwu.edu"
      },
      {
        "affiliation": "The George Washington University",
        "contribution": [
          "createdBy"
        ],
        "name": "Robel Kahsay",
        "email": "rykahsay@gwu.edu"
      },
      {
        "affiliation": "University of Georgia",
        "contribution": [
          "contributedBy"
        ],
        "name": "Will York",
        "email": "will@ccrc.uga.edu"
      }
    ],
    "license": "https://creativecommons.org/licenses/by/4.0/"
  },
  "usability_domain": [
    "The dataset contains pathway data for all N-glycans which are fully mapped to the GlycoTree framework. Each pathway specifies details for a particular reaction catalyzed by enzymes (UniProtKB Accession) which effect the associated glycan structures (GlyTouCan Accessions)."
  ],
  "extension_domain": {
    "fhir_extension": [],
    "scm_extension": {
      "scm_repository": "",
      "scm_type": "git",
      "scm_commit": "",
      "scm_path": ""
    },
    "additional_license": {
      "data_license": "https://creativecommons.org/licenses/by/4.0/",
      "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
    },
    "dataset_categories": [
      {
        "category_value": "",
        "category_name": "species"
      },
      {
        "category_value": "Glycan",
        "category_name": "molecule"
      },
      {
        "category_value": "Pathway GlycoTree",
        "category_name": "tags"
      },
      {
        "category_value": "Reviewed",
        "category_name": "status"
      },
      {
        "category_value": "csv",
        "category_name": "file_type"
      },
      {
        "category_value": "internal",
        "category_name": "scope"
      }
    ]
  },
  "description_domain": {
    "keywords": [
      "Glycan",
      "GlyTouCan Accession",
      "Pathway",
      "Glycotree"
    ],
    "pipeline_steps": [
      {
        "step_number": 1,
        "name": "make-species-agnostic-dataset.py",
        "description": "The input file was downloaded from the source author and a python script was used to extract the following keys: glytoucan_ac,source,target,residue_id,residue_name,enzyme_uniprotkb_ac,enzyme_tax_name. The script also assigned the recommended enzyme taxonomy name based on the UniProtKB accession. ",
        "version": "",
        "prerequisite": [],
        "input_list": [
          {
            "uri": "https://data.glygen.org/ln2releases/data/v-2.0.1/reviewed/glycan_masterlist.csv",
            "filename": "glycan_masterlist.csv"
          },
          {
            "uri": "https://data.glygen.org/ln2downloads/sandbox/02_06_2022/allPaths.json",
            "filename": "allPaths.json"
          }
        ],
        "output_list": [
          {
            "uri": "https://data.glygen.org/ln2releases/data/v-2.0.1/reviewed/glycan_pathway_glycotree.csv",
            "filename": "glycan_pathway_glycotree.csv"
          }
        ]
      }
    ]
  },
  "execution_domain": {
    "script": [],
    "script_driver": "",
    "software_prerequisites": [],
    "external_data_endpoints": [],
    "environment_variables": {}
  },
  "parametric_domain": [
    {
      "param": "",
      "value": "",
      "step": ""
    }
  ],
  "io_domain": {
    "input_subdomain": [
      {
        "uri": {
          "uri": "https://data.glygen.org/ln2releases/data/v-2.0.1/reviewed/glycan_masterlist.csv",
          "filename": "glycan_masterlist.csv"
        }
      },
      {
        "uri": {
          "uri": "https://data.glygen.org/ln2downloads/sandbox/02_06_2022/allPaths.json",
          "filename": "allPaths.json"
        }
      }
    ],
    "output_subdomain": [
      {
        "mediatype": "csv",
        "uri": {
          "uri": "https://data.glygen.org/ln2releases/data/v-2.0.1/reviewed/glycan_pathway_glycotree.csv",
          "filename": "glycan_pathway_glycotree.csv"
        }
      },
      {
        "mediatype": "csv",
        "uri": {
          "uri": "https://data.glygen.org/ln2releases/data/v-2.0.1/reviewed/glycan_pathway_glycotree.stat.csv",
          "filename": "glycan_pathway_glycotree.stat.csv"
        }
      }
    ]
  },
  "error_domain": {
    "empirical_error": {},
    "algorithmic_error": {}
  }
}