{ "uniprot_canonical_ac": "O21037-1", "uniprot_ac": "O21037", "uniprot_id": "RM06_DICDI", "mass": { "chemical_mass": 19083.0, "monoisotopic_mass": 19083.0 }, "refseq": { "ac": "NP_050100", "name": "ribosomal protein L6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_050100" }, "gene_names": [ { "name": "mrpl6", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/O21037", "id": "O21037" }, { "name": "DDB_G0294038", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprot/O21037", "id": "O21037" }, { "name": "rpl6", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_050100", "id": "NP_050100" }, { "name": "rpl6", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprot/O21037", "id": "O21037" } ], "protein_names": [ { "name": "Large ribosomal subunit protein uL6m", "resource": "UniProtKB", "type": "recommended", "url": "", "id": "O21037" }, { "name": "60S ribosomal protein L6, mitochondrial", "resource": "UniProtKB", "type": "synonym", "url": "", "id": "O21037" }, { "name": "ribosomal protein L6", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_050100", "id": "NP_050100" } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Dictyostelium discoideum", "taxid": 44689, "evidence": [ { "database": "UniProtKB", "id": "O21037", "url": "https://www.uniprot.org/uniprot/O21037" } ], "common_name": "Cellular slime molds" } ], "gene": [ { "name": "mrpl6", "url": "https://www.uniprot.org/uniprot/O21037", "locus": {} } ], "crossref": [ { "id": "DDB_G0294038", "url": "http://dictybase.org/gene/DDB_G0294038", "database": "dictyBase", "categories": [ "Organism-specific" ] }, { "id": "2193925", "url": "https://www.ncbi.nlm.nih.gov/gene/2193925", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000702", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000702", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020040", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020040", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036789", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036789", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ddi:DidioMp33", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+ddi:DidioMp33", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR11655", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11655", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11655:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11655:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00347", "url": "http://pfam.xfam.org/family/PF00347", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PR_O21037", "url": "http://purl.obolibrary.org/obo/PR_O21037", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_050100", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_050100", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "O21037", "url": "https://www.uniprot.org/uniprot/O21037", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O21037-1", "url": "https://www.uniprot.org/uniprot/O21037-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKYSQNKSLNTFEIEYKIANKSVKIKSSGKMGVITKELKLKEPAIQSNNIYYLKNHGDSRIIIGTMKQQIQGVLAGFCIELKLVGLGFVVHKVGNTLVLDVGYSHYRSCLIPKEVVVKLEGSQIILYSINKEKVTTFASLLKTFKKINMYKGTGILGINEKIKLKKGKVR", "length": 170, "header": "sp|O21037-1|RM06_DICDI Isoform 1 of Large ribosomal subunit protein uL6m OS=Dictyostelium discoideum OX=44689 GN=mrpl6 PE=3 SV=1 CANONICAL=O21037-1" }, "isoforms": [ { "isoform_ac": "O21037-1", "url": "", "sequence": { "sequence": "MKYSQNKSLNTFEIEYKIANKSVKIKSSGKMGVITKELKLKEPAIQSNNIYYLKNHGDSRIIIGTMKQQIQGVLAGFCIELKLVGLGFVVHKVGNTLVLDVGYSHYRSCLIPKEVVVKLEGSQIILYSINKEKVTTFASLLKTFKKINMYKGTGILGINEKIKLKKGKVR", "length": 170, "header": "sp|O21037-1|RM06_DICDI Isoform 1 of Large ribosomal subunit protein uL6m OS=Dictyostelium discoideum OX=44689 GN=mrpl6 PE=3 SV=1 CANONICAL=O21037-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The mitochondrial DNA of Dictyostelium discoideum: complete sequence, gene content and genome organization.", "journal": "Mol. Gen. Genet.", "date": "2000", "authors": "Ogawa S, Yoshino R, Angata K, Iwamoto M, Pi M, Kuroe K, Matsuo K, Morio T, Urushihara H, Yanagisawa K, Tanaka Y", "evidence": [ { "database": "UniProtKB", "id": "O21037", "url": "https://www.uniprot.org/uniprot/O21037" } ], "reference": [ { "type": "PubMed", "id": "10821186", "url": "https://glygen.org/publication/PubMed/10821186" } ] }, { "title": "A ribosomal protein gene cluster is encoded in the mitochondrial DNA of Dictyostelium discoideum: UGA termination codons and similarity of gene order to Acanthamoeba castellanii.", "journal": "Curr. Genet.", "date": "1998", "authors": "Iwamoto M, Pi M, Kurihara M, Morio T, Tanaka Y", "evidence": [ { "database": "UniProtKB", "id": "O21037", "url": "https://www.uniprot.org/uniprot/O21037" } ], "reference": [ { "type": "PubMed", "id": "9560439", "url": "https://glygen.org/publication/PubMed/9560439" } ] } ], "pathway": [ { "id": "ddi:DidioMp33", "name": "", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+ddi:DidioMp33", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial large ribosomal subunit", "id": "GO:0005762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005762", "evidence": [ { "database": "UniProtKB", "id": "O21037", "url": "https://www.uniprot.org/uniprot/O21037" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "O21037", "url": "https://www.uniprot.org/uniprot/O21037" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "O21037", "url": "https://www.uniprot.org/uniprot/O21037" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "O21037", "url": "https://www.uniprot.org/uniprot/O21037" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "synthesized_glycans": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 20, "end_pos": 22 }, { "start_pos": 6, "end_pos": 8 } ] }, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }