{
    "bcoid": "GLY_001019",
    "title": "Human Glycosylation Citations (EMBL)",
    "description": "The Human Glycosylation Citations (EMBL) dataset contains publication information of the PMIDs present ...",
    "filename": "human_proteoform_citations_glycosylation_sites_embl.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycosylation Sites"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q5JTV8-1...",
                "Deep quantit..."
            ],
            [
                "Q13563-1...",
                "Deep quantit..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "Q5JTV8-1",
                "Deep quantitative glycoproteomics reveals gut microbiome induced remodeling of the brain glycoproteome",
                "bioRxiv",
                "2023",
                "Potel C.M., Burtscher M.L., Garrido-Rodriguez M., Brauer-Nikonow A., Becher I., Typas A., Zimmermann M., Savitski M.",
                "protein_xref_doi",
                "10.1101/2023.09.13.557529v1",
                "protein_xref_doi",
                "10.1101/2023.09.13.557529v1",
                "G62765YT"
            ],
            [
                "Q13563-1",
                "Deep quantitative glycoproteomics reveals gut microbiome induced remodeling of the brain glycoproteome",
                "bioRxiv",
                "2023",
                "Potel C.M., Burtscher M.L., Garrido-Rodriguez M., Brauer-Nikonow A., Becher I., Typas A., Zimmermann M., Savitski M.",
                "protein_xref_doi",
                "10.1101/2023.09.13.557529v1",
                "protein_xref_doi",
                "10.1101/2023.09.13.557529v1",
                "G63332OE"
            ]
        ]
    },
    "readme": "Name\n   - Human Glycosylation Citations (EMBL)\n\nVersion\n   - v-2.5.1\n\nModified on\n   - 2024-05-17T11:24:22.148Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Clement Potel [clement.potel@embl.de], Mira Burtscher [mira.burtscher@embl.de], Martin Garrido [martin.garrido@embl.de]\n\nChecksum\n   - \n\nUsability Domain\n   - The Human Glycosylation Citations (EMBL) dataset contains publication information of the PMIDs present in the Human Glycosylation Sites (EMBL) dataset (https://data.glygen.org/GLY_000888).\n\nDescription Domain\n   Keywords\n   - Publications\n   - Citations\n   - PubMed\n   - glycosylation\n   - EMBL\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMIDs from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: doi_citations.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/compiled/doi_citations.csv\n      Name: human_proteoform_glycosylation_sites_embl.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_proteoform_glycosylation_sites_embl.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_embl.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_proteoform_citations_glycosylation_sites_embl.csv\n      Name: human_proteoform_citations_glycosylation_sites_embl.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_proteoform_citations_glycosylation_sites_embl.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"2821\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"551\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/human_proteoform_citations_glycosylation_sites_embl.csv"
}