{
    "bcoid": "GLY_000997",
    "title": "Chicken Protein Information (NCBI RefSeq)",
    "description": "The Chicken Protein Information (NCBI RefSeq) dataset contains Gallus gallus [taxid:9301] protein information ...",
    "filename": "chicken_protein_info_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Information"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Robel...",
                " mapped NP_0..."
            ],
            [
                "Robel...",
                " feat NP_001..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "p_refseq_ac_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "p_refseq_ac_best_match"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_length"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_summary"
                }
            ],
            [
                "Robel",
                " mapped NP_001264456"
            ],
            [
                "Robel",
                " feat NP_001264456"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Protein Information (NCBI RefSeq)\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2019-01-23T17:21:05.888176\n\nModified on\n   - 2024-05-21T14:57:34.509Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Information (NCBI RefSeq) dataset contains Gallus gallus [taxid:9301] protein information such as protein accession, name, length and protein function summary from NCBI RefSeq database.  \n\nDescription Domain\n   Keywords\n   - protein information\n   - protein length\n   - NCBI RefSeq\n   - protein summary\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_protein_xref_refseq.csv\n      Name: refseq_protein_all_9031.gpff\n      URI: https:/data.glygen.org/ln2downloads/ncbi/refseq/2024_04_12/refseq_protein_all_9031.gpff\n   Output Subdomain\n      Name: chicken_protein_info_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_protein_info_refseq.csv\n      Name: chicken_protein_info_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_protein_info_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"4572\"\n      Name: \"p_refseq_ac_best_match\"\n     Description: \"Best match NCBI RefSeq protein accession to UniProtKB canonical accession\"\n      Unique Values: \"13713\"\n      Name: \"refseq_protein_name\"\n     Description: \"Name of the protein in NCBI RefSeq database\"\n      Unique Values: \"4552\"\n      Name: \"refseq_protein_length\"\n     Description: \"Length of the protein in NCBI RefSeq database\"\n      Unique Values: \"1192\"\n      Name: \"refseq_protein_summary\"\n     Description: \"Function of the protein in NCBI RefSeq database\"\n      Unique Values: \"30\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/chicken_protein_info_refseq.csv"
}