{
    "bcoid": "GLY_000982",
    "title": "Chicken Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Chicken Proteoform Phosphorylation Citations (UniProtKB) dataset contains Gallus gallus [taxid:9606] ...",
    "filename": "chicken_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P12003-2...",
                "The phosphor..."
            ],
            [
                "Q91049-1...",
                "Phosphorylat..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P12003-2",
                "The phosphorylation of vinculin on tyrosine residues 100 and 1065, mediated by SRC kinases, affects cell spreading.",
                "Molecular biology of the cell",
                "2004 Sep",
                "Zhang Z, Izaguirre G, Lin SY, Lee HY, Schaefer E, Haimovich B",
                "protein_xref_pubmed",
                "15229287",
                "protein_xref_uniprotkb",
                "P12003"
            ],
            [
                "Q91049-1",
                "Phosphorylation of Tyr-398 and Tyr-402 in occludin prevents its interaction with ZO-1 and destabilizes its assembly at the tight junctions.",
                "The Journal of biological chemistry",
                "2009 Jan 16",
                "Elias BC, Suzuki T, Seth A, Giorgianni F, Kale G, Shen L, Turner JR, Naren A, Desiderio DM, Rao R",
                "protein_xref_pubmed",
                "19017651",
                "protein_xref_uniprotkb",
                "Q91049"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2021-10-15T08:00:04.645468\n\nModified on\n   - 2024-05-21T15:15:49.194Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Proteoform Phosphorylation Citations (UniProtKB) dataset contains Gallus gallus [taxid:9606] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: chicken_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: chicken_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"25\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"26\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"16\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"26\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"26\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"26\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"25\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/chicken_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}