{
    "bcoid": "GLY_000971",
    "title": "Chicken Protein Canonical sequences (UniProtKB)",
    "description": "The Chicken Protein Canonical (UniProtKB) Sequences dataset contains Gallus gallus [taxid:9031] canonical ...",
    "filename": "chicken_protein_canonicalsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Canonical Protein fasta Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|A0A8V0YQD0-1|A0A8V0YQD0_CHICK Isoform 1 of RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=3 SV=1 CANONICAL=A0A8V0YQD0-1\nMVLYLFDLSAFAKAPNRLRVRGLVPCSCSVLGVGSAAAGAHGEEPLCISSASASSRLMKY\nFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA\nKPRSIQTGFTIGVQQLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTA\nASQAYSQYTTAAYDQYPYAASPAAGFVGYGYTGAVQPPITASTPAAPATAFVQYQPQQLQ\nPDRMQ\n\n\n>tr|A0A8V0ZLD9-1|A0A8V0ZLE6_CHICK Isoform 1 of Ankyrin repeat domain 2 OS=Gallus gallus OX=9031 GN=ANKRD2 PE=4 SV=1 CANONICAL=A0A8V0ZLD9-1\nMSPQRLKGDGPREPLAVERMSTPELEEEKRQGPRNRGIEAIKVRALCRGVGCRRAPSWGP\nTECCMSPQGQDRVRRSSVDLRREIIDVGSIQRLIELRKQRRKRREERAATPEPTPPPEPE\nEIEGPVEPEDFLRAAVQGKIRVIEKFLADGGPPDTCDEFHRTALHRSSLEGHMDILQKLL\nDSGATVDFRDRLDSAAVHWACRGGHLDAVKLLQDRGADLNLKDKLLSTPLHVATRTGHLD\nIVEHLIHCGVDINSPDRVSATPTCSPSPCSLGDAVHRARLLLLQEGDTALHDATRLSRYK\nIIKVLILHGADMMARNLAGKTPTDLVQQWQVDTRQALETKERPQEETEVPA\n\n\n>tr|A0A8V0YEV0-1|A0A8V0YEV0_CHICK Isoform 1 of Wee1-like protein kinase OS=Gallus gallus OX=9031 GN= PE=3 SV=1 CANONICAL=A0A8V0YEV0-1\nMCWGGRGAICRVAGGFLGIPLLLQLQARVRSISSILYGEMDDWENNDFIQRLDFSSCGEE\nGEDRSINEEDTLSSSPIKHCDFQKWNSPLPATPHRKLSEIFLSRTKSWVSPTLKSSPGVS\nRTHGNAETPLHITWKKLQLCDTPHTPKSLLSKTAFPSPGAKVPPKGFRHLRFTPGADLDD\nSTQASLVNINPFTPESYRQMLFLPNGKRKAREIRNPDLRGQVKQELLTKRCPLKDSNMVS\nRYQKEFLELERIGVGEFGSVYKCIKRLDGCVYAIKRSKRPLAGSSDEQLALREVYAHAVL\nGHHPHVVRYYSAWAEDDHMIIQNEHCNGGSLQDVLLENAKRGQYFPEAKLKEILLQVSMG\nLKYIHNSGLVHLDIKPSNIFICHKLVVEGQAGQEESDSDDEFSSGVMYKIGDLGHVTSIA\nNPQVEEGDRRFLANEILQEQYFHLPKADIFALALTIALAAGAGPLPHNGAMWHHIRKGNI\nPSIPQKLPNGFIELLKLMIHPDPMERPSATALTKHPILRPSLGKAVQLQKQLNVEKCKTA\nMLERELKAARLAQTLMKDQPLGNANLQESETSPKKNNKRLVGGKNCRSFSFTVGY\n\n\n>tr|A0A8V0XXW0-1|A0A8V0XXY1_CHICK Isoform 1 of Interleukin 11 receptor subunit alpha OS=Gallus gallus OX=9031 GN=IL11RA PE=3 SV=1 CANONICAL=A0A8V0XXW0-1\nMLQVTAGSQRLLPRDGAGEGAGEGAGRKSQRWGLEFPRVGAVSRPASKLPRCRGLGPQAL\nGFASGCRPAKERGMHSHIRGLGRVMVFLAAALASASLTIPEGWGEEGVQYGQLGTDVTLS\nCIGARTGSLVQWRRDGAMALPEGSAIHQGALVLPHASLAAAGTYSCHDEDGSLLHAVSLQ\nLGHLPGVPFVSCRASDYENFSCSWTSSLETFLPTRYITTYRKKSLTGEEKRRNKSGHVGP\nCLQDPARTGTCTVHRSEFWSSYRLNITEVNPLGSSFRLLDVTMQAIIKPDPPEGLVVEPV\nPLAPRRLHVSWKYPASWPKEPHFQLRFRLQYRPVIHRSWSVVETVNLSEVITDAFAGLEH\nVVQVSAKDFLDAGNWSEWSAEARATPVRDPATMVSEETTTDVSLGSLAEEPSQAPNPEPI\nNRSDPLENTAILVSLGIFAFFVLAAVLVIAILIWLRVRKHSKDETKPHNFLVAATHLKAL\nPRTQILP\n\n\n>tr|A0A8V0ZIX6-1|A0A8V0ZIX6_CHICK Isoform 1 of Ovochymase 2 OS=Gallus gallus OX=9031 GN=OVCH1 PE=1 SV=1 CANONICAL=A0A8V0ZIX6-1\nMCITSSKLLLLLLGVVCITESRAVPHILQKDPKCGQKVHETKPWSYFNLFTRIVGGNQVK\nQGSHPWQVSLKRREKHFCGGTIVSAQWVVTAAHCVSDRADSTHFDCTYYTRKSEDERNLL\nKYLNVTAGEHDLRIRENGEQTLPVKYIIKHPNFDPRRPMNYDIALLKLDGTFNFSSSVLP\nACLPDPGEKFEAGYICTACGWGRLRENGVLPQVLYEVNLPILNSMECSRALSTLRKPIQG\nDTILCAGFPDGGKDACQGDSGGPLLCRRKHGAWILAGVISWGMGCARGWRGNEMKRHYER\nGSPGIFTDLSAVLSWIQENMSADLKMKSSTPFCSVQDGKLTDSEGELNFPGGSEQFYQNH\nQLCIWTLFVPEGNYILLHFSHFDIEPETFCDYDSLSVYSKDDRLVGKFCGGDLPLPILIG\nSNNIRLKFVSDNKDYGTGFSMTYKALTTGILPDSGCESLAVLFEEGVLQSMHYPENYSNL\nAVCQWIICAPEDHVIKLTYQTFEVEESEDCSYDAVTVYEDAGKEEEIAKSCGFVLPAPVL\nSSSSMMLVVFHSDETETFEGFRATITFVHVTDLDTLDSASVEVFENTDMTEEEIQVTTDD\nVCGMPSNQPRFIFSRIIGGEEAVPHSWPWQVSIQISDQHICGGAVLAKEWVITAAHCFNS\nKELYRDLWMVVTGIHDLTEQEYRQKRSVKQYIIHPSFNKTTMDSDIALLQLAEPLEFNHY\nVHPVCLPAKEEVVQPSSVCIITGWGAQEEDREKSKKLHQLEVPILMLEACQTYYINLPSR\nVTQRMICAGFPLEEGKDSCTGDSGGPLVCPSEDGSGFYTLHGITSWGLGCGRKSYPGVYT\nNVGVFVDWIKQSINSSDLPIFMV\n\n\n>tr|A0A8V0XXY0-1|A0A8V0XXY0_CHICK Isoform 1 of Malonyl-CoA decarboxylase OS=Gallus gallus OX=9031 GN=MLYCD PE=1 SV=1 CANONICAL=A0A8V0XXY0-1\nMVVTGEKDPGITGLHSERLKERALRTIKALRKEGQPTAPVKEQPNSAFSRPPHSRWRRSA\nSHAAPHSPALPLLASDWRVRGASQSARPLPLRGRCRGLAQLEAAVGGGMSRLVPCLRSRL\nLLCECRAVSRGLLRVSLAAGPCRGTAGCGAASDVSMEELLSRSVPPLPPYETKEKAPPPA\nELRGAEFVRYYRGLPAGPPRAELLTRLARDFGVDHGRVAEFSAKVLQAREQQRELGALLQ\nAEDRLRYYLNPRYRGLFQHLGRLEGGLRFLVELRGDLVEGLASKAVDGPHVKEMSGVLKN\nMLSEWFSTGFLNLERVTWQSPCEVLQKISDSEAVHPVRNWVDMKRRVGSYRRCYFFSHCA\nIPGEPLIVLHVALTSDISSSIQAIVKEVEPLETEDADKITTAIFYSISLTQQGLQGVELG\nTYLIKRVVKELQKELPQIKTFSTLSPIPGFTKWLVGLLSSQTKELEKNELFTESERQELS\nQITGDCTTETLKKLLNNNEWVRSEKLVNALHSPLMRLCAWYLYGEKHRGYALNPVANFHL\nQNGSVLWRINWMADTSPRGIAAACGMMVNYRYFLEDTASNSAAYLGTKAIKASEQVLSLV\nSQFQQNSKL\n\n\n>tr|A0A8V0XA18-1|A0A8V0XA18_CHICK Isoform 1 of Nyctalopin OS=Gallus gallus OX=9031 GN=NYX PE=4 SV=1 CANONICAL=A0A8V0XA18-1\nMGSTHSLLSVILWVPHVHAVWACVRSCPANCVCTQERSCSVLCDRAGLGQIPSEFPCEAS\nSINLDKNSIKFLSERAFGTLPSLKSLSLNHNNISFITPGAFKGLPSLTELKMAHNEYIRY\nLHTRTFTALRRLVKLDLADCNLFNIPDRIFIELPSLQELFCFQNNFRRIPGAIRGMENLT\nHVYLERNRIEAVAYNSLQGLTKLKYLNLQDNRINVVHERAFQGCRKMEYLYLNDNLISEL\nPENSFDGLRCLKMLNLGGNFLRNVSNTWFRDLVELEVLYLDRNRINYIEEGAFENLTSLV\nSLHLNSNNLTTLPFSVFQPVYFLGRLYLFRNPWECDCRIEWLKEWMENYRLVRDIPCASP\nSSVAGIDLMDVLYDRSPEGYCLDPVELNVTSDSPTPSSKPFSTTESKFNSLISKLLLQMG\nLPEEVANTTEVFSNATQLDGLADGVTSGTREDSSKAISFSFHLPALLTVVIFQSK\n\n\n>tr|A0A8V0XA19-1|A0A8V0XA19_CHICK Isoform 1 of Mucolipin TRP cation channel 1 OS=Gallus gallus OX=9031 GN=MCOLN1 PE=4 SV=1 CANONICAL=A0A8V0XA19-1\nMAAPSETERLLSRAPGYGATEAPAAVEEEEEEEELRRRLKYFFMSPCDKYRARGRRPVKL\nGLQLAKILLVTVQLILFGLSNQMVVTFKEENTIAFKHLFLKDYVDGADDSYAVYTQHDLY\nDRVFYAVDKYLAIPNETIGRYAYVRGQSGGNQSALMLCQQYYRRGRIDPANDTFNIDPKI\nVTDCLGVDPEDPHPLPPELDRSYKNFTFKFHKLINVTIQFKLKAINIQTIINNEIPDCYT\nFTITITFDNKAHSGRVKIHLDNRADIKECKDHSVFGRGDNSFRLFFDVVVILVCSLSFIL\nCARSIIRGLMLQHEFSQFFQRRYNQSVCLSDRMEFLNGWYILLVISDVLTVLGTIMKIGI\nESKNFADYDVCSILLGTSTLLVWVGVIRYLTFFQKYNILIVTLRVALPNVIRFCCCVAVI\nYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFITFAEMQQNSYLVWLFSQIYL\nYTFISLFIYMVLSLFIALITGSYETIKHQCEGETPVSQLHAYIAECKDSPKSGKYRRDSA\nSTCSVFCCCERAPLQDNALLVN\n\n\n>tr|A0A1D5PAZ6-1|A0A1D5PAZ6_CHICK Isoform 1 of Neuromedin B OS=Gallus gallus OX=9031 GN=NMB PE=3 SV=1 CANONICAL=A0A1D5PAZ6-1\nMKALRCFLLLLCGAALGPAVHLDFAEHRSQAAKIKVNPRGNLWATGCQRAVQMTAWSSEA\nPAAMPGLWGTRARCVAGHFMGKKSVSGTPHLDVPGQPAVPMAFGPSLRALLEDVVELLTR\nELLKILLQERLLDENRGKYDLTDQETGLLTKVLEKYFSN\n\n\n</pre>"
    },
    "readme": "Name\n   - Chicken Protein Canonical sequences (UniProtKB)\n\nVersion\n   - v-2.5.1\n\nModified on\n   - 2024-05-21T14:22:39.804Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Canonical (UniProtKB) Sequences dataset contains Gallus gallus [taxid:9031] canonical protein fasta sequences from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein sequence\n   - fasta\n   - UniProtKB canonical accessions\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all chicken canonical accessions data from the triplestore containing triples from nt file and extracts it into a dataset as fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-gallus-gallus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_04_08/uniprot-proteome-gallus-gallus.nt\n   Output Subdomain\n      Name: chicken_protein_canonicalsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_protein_canonicalsequences.fasta\n      Name: chicken_protein_canonicalsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_protein_canonicalsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"18370\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/chicken_protein_canonicalsequences.fasta"
}