{
    "bcoid": "GLY_000917",
    "title": "Pig Protein Isoform sequences (UniProtKB)",
    "description": "The Pig Protein Isoform sequences (UniProtKB) dataset contains Sus scrofa [taxid:9823] protein fasta ...",
    "filename": "pig_protein_allsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "All Protein Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|A0A8W4F999-1|A0A8W4F999_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A8W4F999-1\nMNVKNVGRPLFVVPNFSNNIRFILERNSMNVHNVGRPLFVPHNLLNIRELILPRSPINAR\nNVGKPLSVAQNLPDIRAFTLAKNPMNVRNVGRALDRLHTLLNISRFIL\n\n\n>tr|A0A4X1U1I8-1|A0A4X1U1I8_PIG Isoform 1 of Cytosolic iron-sulfur assembly component 2A OS=Sus scrofa OX=9823 GN=CIAO2A PE=3 SV=1 CANONICAL=A0A287BQ89-1\nMERVSGLLSRTLNRVLWLSGLFERGAARQPRIMEEKALEVYDLIRTIRDPEKPNTLEELE\nVVSESCVEVQEINEEDYLVIIRFTPTVPHCSLATLIVGNLHI\n\n\n>tr|A0A8W4F993-1|A0A8W4F993_PIG Isoform 1 of Cathepsin C OS=Sus scrofa OX=9823 GN=CTSC PE=1 SV=1 CANONICAL=A0A4X1U3C8-1\nMTGWVHDVLGRNWACFTGEKAGNTFEKVNVNTAHLKSRQKKYSNRLYKYNHDFVKAINGI\nQKSWTATAYMEYETLTLKEMTQRGGGYNQRLPRPKPAPITAEIQEKSLHLPASWDWRNVR\nGTNFVTPVRNQASCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSCSQYAQGCAGG\nFPYLIAGKYAQDFGLVEEACFPYTGTDSPCTVKEGCFRYYSSEYHYVGGFYGGCNEALMK\nLELVHHGPMAVAFEVYDDFLHYRKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDLASGMD\nYWIVKNSWGTSWGEDGYFRIRRGTDECAIESIAVAATPIPKL\n\n\n>tr|A0A8W4F992-1|A0A8W4F992_PIG Isoform 1 of Zinc finger protein 446 OS=Sus scrofa OX=9823 GN=ZNF446 PE=4 SV=1 CANONICAL=A0A287BSN5-1\nMPSPLGPPSLPSLDSEATLEEPEAARQRFRGFCYQEAAGPHEALARLRELCHQWLQPEAH\nSKEQMLELLVLEQFLGALPPEIQAWVRGQRPGSPEEAAVLVEGLQHDPGQLLSWITAHVL\nKRAVLPAAQKTEKSVRSSHPSEPVEPLRAASGEGSNDAQMEGGAHPSCSVKEEPAGYGQE\nTGESGAPSSPLNPATSHERCLERQEPTSAPFHPSRIQVTGLPRPLPEALAESEPEGLSPG\nPEGQRSLRPGKGPPAPGGWGRERGPGVAGDLALPRLPPAGESASSGAEGPSGRPGAPPPA\nAWEGPSAAAAPPPPPPPRSKRYTCAQCGRAFDWKSVFVIHRRAHANAPGAETPPQAPPRR\nAPPGPRSYSCEECGRSFSWKSQLVIHRKSHAGQRRHLCGDCGHSFDWKSQLVIHLKSHRP\nEAP\n\n\n>tr|A0A8W4F991-1|A0A8W4F991_PIG Isoform 1 of Male germ cell associated kinase OS=Sus scrofa OX=9823 GN=MAK PE=1 SV=1 CANONICAL=F1RV90-1\nMNRYTTMRQLGDGTYGSVLMGKSNESGELVAIKRMKRKFYSWDECMNLREVKSLKKLNHA\nNVIKLKEVIRENDHLYFIFEYMKENLYQLMKDRNKLFPESVIRNIMYQILQGLAFIHKHG\nFFHRDMKPENLLCMGPELVKIADFGLARELRSQPPYTDYVSTRWYRAPEVLLRSSVYSSP\nIDVWAVGSIMAELYTLRPLFPGTSEVDEIFKICQVLGTPKKSDWPEGYQLASSMNFRFPQ\nCAPINLKTLIPNASNEAIQLMTEMLSWDPKKRPTASQALKHPYFQVGQVLGPSSHHLESK\nQPLNKQVQPLESKPSVGDLEPKLLPDINDQTAGQPQPRNSHQPLQSIQPPQDTSGQQAPK\nQQSQQKQPQTLFPRIVKNMPIKPNGTLGHKGARRRWGPTVFKAGDSGEESEDYDFGASHS\nKKPSMGVFKETRRKDSPFRLPEPVPTGSNHSSGENKSLTAAGSLKSDSELSTASAAKQYY\nLKQSRYLPGVNPKNVSLVTRGKDINPYSWNNQLFPKSLGPIGAELAFKRNNAESGVVIKV\nSLHYATYNQSGYIPSFLKKEVGSAGQRIPLVPLGATASEYSWNTKMGRGQFSGPTYNPTA\nKNLNMVNRAQPVPSVHGRTDWVAKYGGHR\n\n\n>tr|A0A8W4F990-1|A0A8W4F990_PIG Isoform 1 of Tenascin N OS=Sus scrofa OX=9823 GN=TNN PE=3 SV=1 CANONICAL=F1S708-1\nMGLQEMFCFLLALLFGSVLLVASAPATLESPGCSNKEQQVTVSHTYKIDVPKSALVQVEA\nDPQPLSDDGTSLLAPGETEEQNIIFRHNIRLQTPQKDCELAGSVQDLLARVKKLEEEMAE\nVKEQCSAQRCCPRAAGLSHHCSGHGTFSPVTCSCHCEQGWEGADCERPACPGACSGHGQC\nVDGRCLCEQPYVGIDCAYPACPENCSGHGACVRGVCQCHEDFTSEDCSERRCPGDCSGHG\nFCDTGECYCEEGFTGLDCSQVVAPQGLQLLKSTEDSLLVSWEPSSQVDHYLLSYYPLGKE\nRSVKQIQVPKEQHSYEILGLLPGTKYIVTLRNVKKEISSSPQHLLATTDLAVLGTAWVTD\nETENSLDVEWENPSTEVDYYKLQYGPLTGQEVAEVTVPKSSDPKSRYDITGLQPGTEYKI\nTVVPMRGDLEGKPILLNGRTEIDSPTNVVTDQVTEDTAVVSWDPVRAVIDKYVVRYISAD\nGETKDTAVPKEQSSTVLTGLKPGEAYEVYVWAERGSQESKKADTNALTDLDSPKNLVTTQ\nVTENTATVSWDPVQAVIDRYLVRYTSADGDTREVPVGKEQSSTILMGLRPGVEYTVHVWA\nQKGDRESRKADTTAPTDIDSPKNLVTTQVTENTATVSWDPVQAVIDRYLVRYTSADGDTR\nEVPVGKEQSSTVLTGLRPGMEYTVHVWAQKGDRESKKADTMAPTEIDSPQNLVTTRVTEN\nTATVSWDPVQAVIDRYLVRYTSADGDTREVPVGKEQSSTVLMGLRPGVEYTVHVWAQKGD\nRESRKADTTALTDIDPPQNLRPSSVTQSSGVLTWKPPSAQIDGYILTYQFPDGTVKEVQL\nGRGDQRFELQGLEQGVTLPVSLVAFKGDRRSRSISTTLSTVGARFPHPSDCSQVQQNSNV\nASGLYTIYLHGDASRPLQVYCDMDTDGGGWIVFQRRNTGQLDFFKRWRTYVEGFGDPMKE\nFWLGLDKLHNLTTGTPTRYEVRVDLQTANESAFAIYDFFQVASSKERYRLTVGKYRGTAG\nDALTYHNGWKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPNGRYGETKHSEGVNWEP\nWKGHEFSIPFVELKIRPHGYSGEHVLGRKKRTLGESSRTF\n\n\n>tr|A0A8W4F997-1|A0A8W4F997_PIG Isoform 1 of Rho GTPase-activating protein 26 OS=Sus scrofa OX=9823 GN=ARHGAP26 PE=1 SV=1 CANONICAL=A0A8W4FMS3-1\nIERAGPRGRCLPSGQDLSSAKRKFADSLNEFKFQCIGDAETDDEMCIARSLQEFATVLRN\nLEDERIRMIENASEVLLTPLEKFRKEQIGAAKEAKKKYDKETEKYCGILEKHLNLSSKKK\nESQLQEADSQVDLVRQHVYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYE\nLAKDFSDFKTQLTISIQNTRNRFEGTRSEVESLMRKMKENPLEHKTISPYTMEGYLYVQE\nKRHFGTSWVKHYCTYQRDSKQITMVPFDQKSGGKGGEDESVTLKSCTRRKTDSIEKRFCF\nDVEAVDRPGVITMQALSEEDRRLWMEAMDGREPVYNSNRDSQSEGTAQLDSIGFSIIRKC\nIHAVETRGINEQGLYRIVGVNSRVQKLLSVLMDPKAAAETEADICAEWEIKTITSALKTY\nLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLQMLMNHLANVAN\nNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVVEILIENHEKIFNTVPDAPL\nANTLHLSRKKSGDSKPPSCSERPLTLFHTTQSTDRQEQRNSLINSSLESVVSSNANSILN\nSSSSLQPNMNSSDPDLDTLKPARPNSLVPFRKAKALYACKAEHDSELSFTAGTVFENVHP\nSQEPGWLEGTLNGKTGLIPENYVEFL\n\n\n>tr|A0A8W4F995-1|A0A8W4F995_PIG Isoform 1 of Reticulon OS=Sus scrofa OX=9823 GN=RTN1 PE=1 SV=1 CANONICAL=I3L6J1-1\nMAAPPDSQDELLPLTSPGSQWLGDRGEGEDEAVTPKGAQPAPQAGEPGSGLGAGAREASQ\nLELGSGPARPPPVAMETASTGMADVSRATDHTFATAARDGGGVCYTSLISDICYPPREDS\nTYFTGILQKENGHIATSESPEEVRTTRPSFPDVPVTEPRGFFSSDSGIEMTPAESTKVSK\nILADPIDQMKAEACKYIDITRPEEVRDQEQCHPKAEEKDLDLKNKDTEISDQSEEAREAE\nKPTPVEGKILKDHLFEESTFALYVDDISEEQHSAPVVTAPVKITLTEIEPSVDTATPEKT\nPEKQDICLKPSPDTVPTVTVSEPEDDSPGSVTPPSSGTEPSAAESQGKCSISEDELITAI\nKEAKGLSYETTESPRSAGQVVDRPEAKARSGLPTIPSPLDHEASSAESGDSEIELVSEDP\nLAAEDALPSGYVTFGHVGGPPPSPASPSIQYSILREEREAELDSELIIESCDASSASEES\nPKREQDSPLMKPGALDAIREEPGARAEEHAPSQRGLVEFPSAIPQTGPKLPPGDGAPASE\nEPSLPPKPVETASSDQSSPATGVPGPLGPGVAPPLLFLNKQKAIDLLYWRDIKQTGIVFG\nSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKTDEGHPFKAYLELEIT\nLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLL\nMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAK\n\n\n>tr|A0A8W4F994-1|A0A8W4F994_PIG Isoform 1 of Cation channel sperm-associated auxiliary subunit delta OS=Sus scrofa OX=9823 GN=CATSPERD PE=3 SV=1 CANONICAL=F1SBU6-1\nGIRYKPQDQLYFSFGTTRLIKHPCKKNIALYLGRQIFLTRDNFESSLLPCSIPTSMQVGI\nPEVTSAHFAGSVLLLVVNRKVYVYDYEANSWNASTGIEHPVSHISGDNCCYSENSFCMDI\nSNSVFAYLHGAQISQTNIYFSNTRGYRFQKFAHERQAELVGSLGGVFYFHSLSQVGLLLI\nDQRKAMFSYSDHPLNRSFGLPFDYNGTLDILIAPGQKGILIFWFEKSLLVSRNAGQLVDP\nVRVREGQHILYPSIFDANITIHSIAANENELAVLTRESNLYYGSLGILSSSLIKFADQDI\nWSEEAVLVFTDVGLLEILTPLPDSTFPAFDFQKCPMNIQEILMDPQLHIDVCKVKLLQGE\nFANKMYTIDMNSKLELTALMIPRPGTSPVPLVMVSNPHSLGLQAVIYEDGYTYDGNTKHR\nLNISLRQQHHWGRADPNFTSSIKRSTISTITLDIANKEISCVDLKPLGGTHDFLVPHGSG\nSFSPIFVAHSEISACYNGILDPVALQDNYSYVIEREAYDPNFRGQEASEDLKVHYQYEKL\nGCPLLAYYDTPWKPVVELWREGTFQEVVEAEYVLLEVNGLFTYTYSLTADTALCNSQPQN\nWTSIAEMAGDQGLFAWDRETYVSCHDPDNEAPLTWPKVPYQILGGPTDNKVIFDQRNGIY\nIFFISIVDPYYSYCHLEATFSVYVYGAFPLSIIPAELTIVLLTVATLLSVWLAYMIPKQL\nHTEQGLRLKDFWVHLYRRCRKFCACFQGRC\n\n\n</pre>"
    },
    "readme": "Name\n   - Pig Protein Isoform sequences (UniProtKB)\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - \n\nModified on\n   - 2024-05-17T11:24:18.259Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Pig Protein Isoform sequences (UniProtKB) dataset contains Sus scrofa [taxid:9823] protein fasta sequences for the pig isoform accessions from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - protein isoform sequences\n   - fasta\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all pig isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sus-scrofa.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_04_08/uniprot-proteome-sus-scrofa.nt\n   Output Subdomain\n      Name: pig_protein_allsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/pig_protein_allsequences.fasta\n      Name: pig_protein_allsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/pig_protein_allsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"46251\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/pig_protein_allsequences.fasta"
}