{
    "bcoid": "GLY_000800",
    "title": "Yeast O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)",
    "description": "The Yeast O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication ...",
    "filename": "yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations O-GlcNAc (O-GlcNAc Atlas)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "O14467-1...",
                "Identificati..."
            ],
            [
                "P00815-1...",
                "Identificati..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "O14467-1",
                "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.",
                "The Journal of general and applied microbiology",
                "2021-04-16",
                "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki",
                "protein_xref_pubmed",
                "33229814",
                "protein_xref_oglcnac_atlas",
                "O14467",
                "G49108TO"
            ],
            [
                "P00815-1",
                "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.",
                "The Journal of general and applied microbiology",
                "2021-04-16",
                "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki",
                "protein_xref_pubmed",
                "33229814",
                "protein_xref_oglcnac_atlas",
                "P00815",
                "G49108TO"
            ]
        ]
    },
    "readme": "Name\n   - Yeast O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2023-02-27T21:08:01.227Z\n\nModified on\n   - 2024-05-17T11:24:13.758Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Jungfeng Ma [junfeng.ma@georgetown.edu ]\n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication present in the dataset Yeast O-GlcNAc Glycosylation Sites (O-GlcNAc Atlas)  https://data.glygen.org/GLY_000711, contributed by Jungfeng Ma's group.\n\nDescription Domain\n   Keywords\n   - O-GlcNAc\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: yeast_proteoform_glycosylation_sites_oglcnac_atlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/yeast_proteoform_glycosylation_sites_oglcnac_atlas.csv\n   Output Subdomain\n      Name: yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n      Name: yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"462\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"462\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv"
}