{
    "bcoid": "GLY_000746",
    "title": "Yeast Protein Canonical sequences (UniProtKB)",
    "description": "The Yeast Protein Canonical (UniProtKB) Sequences dataset contains yeast [taxid:559292] canonical protein ...",
    "filename": "yeast_protein_canonicalsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Canonical Protein fasta Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>sp|P30619-1|SEC1_YEAST Isoform 1 of Protein transport protein SEC1 OS=Saccharomyces cerevisiae S288C OX=559292 GN=SEC1 PE=1 SV=1 CANONICAL=P30619-1\nMSDLIELQRNYLIGVLNQIETKNNLKFLIIDKTVETILSYLFLTPQELLNNVTSVDLIDS\nPTRKGQSSIEAIYILEPTKYNINCIDADFMVRPPKYRRCHIRFLPGLTNPIFQFFQSKRY\nIAQNLESFKPIELGFFVKESQFFETLQMEHSLQVFFNNNCKALIPTNVRKIVGSLVSLCV\nITGEYPIVRYSVSNPVEEEDARNGNAVVNANSLTRSIANAFQIAIDTYARNNPDFPPQNT\nERPRSILIITDRTLDPFAPILHDFSYQAMAYDLVANVDTQKDIYHYSAENEAGEQEEKVS\nKLVDLYDPDWIDLKHQHIMDANEYIQGRIKELIAKNPLLVDRSNVKNTTDLLSVVAHLKD\nFDEERRRLILHKTLVDECLGENAERKLADISAIEQNLSGFGMDFSGEKIKHIIDDLLPAL\nAMKEPTILDKLRYIIAYALFRGGIIELDFIKLLNFIGVTHEHENFQQYLKIFRNYDLIDF\nKLIKDKPKDKPFQKEWFHDTLVNDPNIYHTSRFVPAVGNILSKVIANPLLLSEQYFPYLK\nDKPIELLNEEEFQAGLANTSANSSSSLRNPRHKAAWTTKSSNIKKNIPRQRFFYYVIGGI\nSIPEIKAAYDQSNLKNRDIFIGSDEILTPTKFLDEVERLQNPREFFKFKEDQRQQVNPPD\nFLLREMKPVAQPVSHVHLKSQDNSPKSGTSSPKAAGSLKSEPPEKEKKRSKFSRFLKRKS\nHHDK\n\n\n>sp|P39972-1|YEI5_YEAST Isoform 1 of Uncharacterized protein YEL075C OS=Saccharomyces cerevisiae S288C OX=559292 GN= PE=4 SV=1 CANONICAL=P39972-1\nMKVSDRRKFEKANFDEFESALNNKNDLVHCPSITLFESIPTEVRSFYEDEKSGLIKVVKF\nRTGAMDRKRSFEKVVISVMVGKNVKKFLTFVEDEPDFQGGPIPSNKPRDGLHVVSSAYFE\nIQ\n\n\n>sp|P39970-1|ACA1_YEAST Isoform 1 of ATF/CREB activator 1 OS=Saccharomyces cerevisiae S288C OX=559292 GN=ACA1 PE=1 SV=1 CANONICAL=P39970-1\nMDYKHNFATSPDSFLDGRQNPLLYTDFLSSNKELIYKQPSGPGLVDSAYNFHHQNSLHDR\nSVQENLGPMFQPFGVDISHLPITNPPIFQSSLPAFDQPVYKRRISISNGQISQLGEDLET\nVENLYNCQPPILSSKAQQNPNPQQVANPSAAIYPSFSSNELQNVPQPHEQATVIPEAAPQ\nTGSKNIYAAMTPYDSNIKLNIPAVAATCDIPSATPSIPSGDSTMNQAYINMQLRLQAQMQ\nTKAWKNAQLNVHPCTPASNSSVSSSSSCQNINDHNIENQSVHSSISHGVNHHTVNNSCQN\nAELNISSSLPYESKCPDVNLTHANSKPQYKDATSALKNNINSEKDVHTAPFSSMHTTATF\nQIKQEARPQKIENNTAGLKDGAKAWKRARLLERNRIAASKCRQRKKMSQLQLQREFDQIS\nKENTMMKKKIENYEKLVQKMKKISRLHMQECTINGGNNSYQSLQNKDSDVNGFLKMIEEM\nIRSSSLYDE\n\n\n>sp|P39971-1|YEI6_YEAST Isoform 1 of Uncharacterized protein YEL076C OS=Saccharomyces cerevisiae S288C OX=559292 GN= PE=4 SV=1 CANONICAL=P39971-1\nMQASLPGEKKVDTERLKRDLCPRKPIEIKYFSQICNDMMNKKDRLGDILHIILRACALNF\nGAGPRGGAGDEEDRSITNEEPIIPSVDEHGLKVCKLRSPNTPRRLRKTLDAVKALLVSSC\nACTARDLDIFDDNNGVAMWKWIKILYHEVAQETTLKDSYRITLVPSSDGISVCGKLWGEL\nNNCFHMPASFCVIEKFCSENRSEELTSIWKTILFFK\n\n\n>sp|P39976-1|DLD3_YEAST Isoform 1 of D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3 OS=Saccharomyces cerevisiae S288C OX=559292 GN=DLD3 PE=1 SV=1 CANONICAL=P39976-1\nMTAAHPVAQLTAEAYPKVKRNPNFKVLDSEDLAYFRSILSNDEILNSQAPEELASFNQDW\nMKKYRGQSNLILLPNSTDKVSKIMKYCNDKKLAVVPQGGNTDLVGASVPVFDEIVLSLRN\nMNKVRDFDPVSGTFKCDAGVVMRDAHQFLHDHDHIFPLDLPSRNNCQVGGVVSTNAGGLN\nFLRYGSLHGNVLGLEVVLPNGEIISNINALRKDNTGYDLKQLFIGAEGTIGVVTGVSIVA\nAAKPKALNAVFFGIENFDTVQKLFVKAKSELSEILSAFEFMDRGSIECTIEYLKDLPFPL\nENQHNFYVLIETSGSNKRHDDEKLTAFLKDTTDSKLISEGMMAKDKADFDRLWTWRKSVP\nTACNSYGGMYKYDMSLQLKDLYSVSAAVTERLNAAGLIGDAPKPVVKSCGYGHVGDGNIH\nLNIAVREFTKQIEDLLEPFVYEYIASKKGSISAEHGIGFHKKGKLHYTRSDIEIRFMKDI\nKNHYDPNGILNPYKYI\n\n\n>sp|P39977-1|YEH8_YEAST Isoform 1 of Uncharacterized protein YEL068C OS=Saccharomyces cerevisiae S288C OX=559292 GN= PE=1 SV=1 CANONICAL=P39977-1\nMKILALAVAFQGLALVCCTDTTDNYNNFTHNTSTFYRIADYDKRFWSVKLPPVNWTTCGN\nEDHPWITIHYDEIDKLVDDKLASWDKGPVPDREEFRNSILRQARCDRPHY\n\n\n>sp|P39974-1|YEI3_YEAST Isoform 1 of Uncharacterized protein YEL073C OS=Saccharomyces cerevisiae S288C OX=559292 GN= PE=4 SV=1 CANONICAL=P39974-1\nMVNLANVLTNATAATLSAWSNTVPLETYFHFDEASGFGDYYLNVSVIWMNETLYETRIVP\nAIINVREWLDHMEANDPSPSVTNPYETSGYYAFSTVVPVLMGNMKVA\n\n\n>sp|P39975-1|RMD6_YEAST Isoform 1 of Sporulation protein RMD6 OS=Saccharomyces cerevisiae S288C OX=559292 GN=RMD6 PE=4 SV=1 CANONICAL=P39975-1\nMSACPCNIVILPVEILKNSSKDTKYSLYTTINRGYDVPRLKYGIIVSPRVHSLETLFSDL\nGFDKNIEKSSLYLLLNDPTLAYPNFHEHFEQLKGETNKDLSLPTYYIPKVQFLTEAFDSE\nHTLATIGYKPNNKESYEITGFTSMGNGYGIKLFNYSVIHMMRSHKCKRVVADIIMEHDLL\nGYYEKKLGFVEVQRFKVLKEQHQVKVFDDKVDFTKDFHVIKMIKELGNHRL\n\n\n>sp|P39978-1|YEH7_YEAST Isoform 1 of Uncharacterized protein YEL067C OS=Saccharomyces cerevisiae S288C OX=559292 GN= PE=4 SV=1 CANONICAL=P39978-1\nMAFTTIRSLTIFSGSSFDMPTFFVLAKGGDGSGVFFISLHSSILYARFPLLNILSQHSPV\nYCSRRFPPDNDLITGLGNIRCGQLVKKALRRVCNVPPDHQLIASVRSIGYARVAFVFCTC\nTSECRDNLQSVTRTSGHQTTISQPCTDIQSTRKCSTIFVSAVMQTGTITFFWTFHFPIPL\nQRIVNQKQPPPQSYV\n\n\n</pre>"
    },
    "readme": "Name\n   - Yeast Protein Canonical sequences (UniProtKB)\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2022-08-30T14:04:28.411067\n\nModified on\n   - 2024-05-17T11:24:11.622Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast Protein Canonical (UniProtKB) Sequences dataset contains yeast [taxid:559292] canonical protein fasta sequences from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein sequence\n   - fasta\n   - UniProtKB canonical accessions\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all yeast canonical accessions data from the triplestore containing triples from nt file and extracts it into a dataset as fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_04_08/uniprot-proteome-saccharomyces-cerevisiae.nt\n   Output Subdomain\n      Name: yeast_protein_canonicalsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/yeast_protein_canonicalsequences.fasta\n      Name: yeast_protein_canonicalsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/yeast_protein_canonicalsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"6060\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/yeast_protein_canonicalsequences.fasta"
}