{
    "bcoid": "GLY_000738",
    "title": "Glycan Biomarkers Citations (Biomarker Database)",
    "description": "The Glycan Biomarkers Citations dataset contains details of the publications present in the Glycan Biomarkers ...",
    "filename": "glycan_citations_biomarkers.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "Glycan Biomarkers Citations (Biomarker Database)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Drosophila melanogaster",
            "Homo sapiens",
            "Mus musculus",
            "Sus scrofa",
            "Rattus",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Saccharomyces cerevisiae",
            "Dictyostelium discoideum",
            "Hepacivirus C"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00053MO...",
                "Elevations o..."
            ],
            [
                "G06110VR...",
                "Antibody Pan..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "G00053MO",
                "Elevations of serum cancer biomarkers correlate with severity of COVID-19.",
                "Journal of medical virology",
                "2020 Oct",
                "Wei X, Su J, Yang K, Wei J, Wan H, Cao X, Tan W, Wang H",
                "glycan_xref_pubmed",
                "32347972",
                "glycan_xref_glygen_ds",
                "GLY_000737"
            ],
            [
                "G06110VR",
                "Antibody Panel Based N-Glycan Imaging for N-Glycoprotein Biomarker Discovery.",
                "Current protocols in protein science",
                "2019-12",
                "Black Alyson P, Angel Peggi M, Drake Richard R, Mehta Anand S",
                "glycan_xref_pubmed",
                "31721442",
                "glycan_xref_glygen_ds",
                "GLY_000737"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Biomarkers Citations (Biomarker Database)\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2023-03-14T20:13:36.255Z\n\nModified on\n   - 2024-05-17T11:24:11.302Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Dan Lyman [danlyman@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Glycan Biomarkers Citations dataset contains details of the publications present in the Glycan Biomarkers dataset (https://data.glygen.org/GLY_000737).\n\nDescription Domain\n   Keywords\n   - Publications\n   - Citations\n   - PubMed\n   - Biomarker DB\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/glycan_biomarkers.csv\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/glycan_masterlist.csv\n   Output Subdomain\n      Name: glycan_citations_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/glycan_citations_biomarkers.csv\n      Name: glycan_citations_biomarkers.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/glycan_citations_biomarkers.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"79\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"19\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"16\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"19\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"19\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"19\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/glycan_citations_biomarkers.csv"
}