{
    "bcoid": "GLY_000707",
    "title": "Glycan Tool Support",
    "description": "This dataset indicates the tool support status of each GlyTouCan accession. The status is required for ...",
    "filename": "glycan_toolsupport.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Sus scrofa",
            "Rattus",
            "Homo sapiens",
            "Mus musculus",
            "Saccharomyces cerevisiae",
            "Drosophila melanogaster",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Sus scrofa domesticus",
            "Dictyostelium discoideum",
            "Hepatitis C virus (isolate H77)",
            "Severe acute respiratory syndrome-related coronavirus",
            "Hepacivirus C"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00002CF...",
                "gnome_glygen..."
            ],
            [
                "G00002CF...",
                "sandbox..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "tool..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "tool"
                },
                {
                    "type": "string",
                    "label": "support"
                }
            ],
            [
                "G00002CF",
                "gnome_glygen_oglycans",
                "no"
            ],
            [
                "G00002CF",
                "sandbox",
                "yes"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Tool Support\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2023-02-16T02:48:48.291Z\n\nModified on\n   - 2024-05-17T11:24:10.105Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu], Nathan Edwards [nje5@georgetown.edu], Will York [will@ccrc.uga.edu], Robert Woods [rwoods.glycam@gmail.com]\n\nChecksum\n   - \n\nUsability Domain\n   - This dataset indicates the tool support status of each GlyTouCan accession. The status is required for the GlyCan Detail API. The tools are sandbox, gnome, pdb, gnome_glygen, gnome_glygen_nglycans, gnome_glygen_oglycans, gnome_glycotree_nglycans, and gnome_glycotree_oglycans. PDB support for glycam 3D structures was provided by Rob Woods (Glycam/UGA). Sandbox support was provided by Will York (UGA) and Nathan Edwards (Georgetown). All other tool support data was provided by Nathan Edwards (Georgetown).\n\nDescription Domain\n   Keywords\n   - Glycan\n   - Tool Support\n   - Gnome\n   - PDB\n   - Sandbox\n   - GlycoTree\n\n   Pipeline Steps\n   - Step-1: \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/glycan_masterlist.csv\n      Name: 2022_05_24\n      URI: https:/data.glygen.org/ln2downloads/glycam_3d/glycan/2022_05_24\n      Name: GlycoTree_NGlycans.valid-accessions.txt\n      URI: https:/data.glygen.org/ln2downloads/gnome/04_30_2024/GlycoTree_NGlycans.valid-accessions.txt\n      Name: GlycoTree_OGlycans.valid-accessions.txt\n      URI: https:/data.glygen.org/ln2downloads/gnome/04_30_2024/GlycoTree_OGlycans.valid-accessions.txt\n      Name: GlyGen_NGlycans.valid-accessions.txt\n      URI: https:/data.glygen.org/ln2downloads/gnome/04_30_2024/GlyGen_NGlycans.valid-accessions.txt\n      Name: GlyGen_OGlycans.valid-accessions.txt\n      URI: https:/data.glygen.org/ln2downloads/gnome/04_30_2024/GlyGen_OGlycans.valid-accessions.txt\n      Name: GlyGen.valid-accessions.txt\n      URI: https:/data.glygen.org/ln2downloads/gnome/04_30_2024/GlyGen.valid-accessions.txt\n      Name: accessionlist.csv\n      URI: https:/data.glygen.org/ln2downloads/sandbox/04_30_2024/accessionlist.csv\n   Output Subdomain\n      Name: glycan_toolsupport.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/glycan_toolsupport.csv\n      Name: glycan_toolsupport.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/glycan_toolsupport.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"53384\"\n      Name: \"tool\"\n     Description: \"\"\n      Unique Values: \"8\"\n      Name: \"support\"\n     Description: \"\"\n      Unique Values: \"2\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/glycan_toolsupport.csv"
}