{
    "bcoid": "GLY_000697",
    "title": "Rat Proteoform O-GlcNAc Glycosylation Citations (MCW)",
    "description": "The Rat O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in ...",
    "filename": "rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations O-GlcNAc (MCW)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A096MJ01-1...",
                "An O-GlcNAcy..."
            ],
            [
                "A0A0G2JW41-1...",
                "An O-GlcNAcy..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "A0A096MJ01-1",
                "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.",
                "International journal of molecular sciences",
                "2021 Aug 26",
                "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B",
                "protein_xref_pubmed",
                "34502162",
                "protein_xref_oglcnac_db",
                "A0A096MJ01",
                "G49108TO"
            ],
            [
                "A0A0G2JW41-1",
                "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.",
                "International journal of molecular sciences",
                "2021 Aug 26",
                "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B",
                "protein_xref_pubmed",
                "34502162",
                "protein_xref_oglcnac_db",
                "A0A0G2JW41",
                "G49108TO"
            ]
        ]
    },
    "readme": "Name\n   - Rat Proteoform O-GlcNAc Glycosylation Citations (MCW)\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2022-09-06T16:51:28.071892\n\nModified on\n   - 2024-05-17T11:24:09.752Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu],  Rex R. Berendt [rberendt@mcw.edu],  Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in the dataset Rat O-GlcNAc Glycosylation Sites (MCW) contributed by Stephanie Olivier's group.\n\nDescription Domain\n   Keywords\n   - O-GlcNAc\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_proteoform_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_proteoform_glycosylation_sites_oglcnac_mcw.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      Name: rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"584\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"124\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"73\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"123\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"123\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"124\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"584\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv"
}