{
    "bcoid": "GLY_000607",
    "title": "Human Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Human Proteoform Phosphorylation Citations (UniProtKB) dataset contains human [taxid:9606] publication ...",
    "filename": "human_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0DP23-1...",
                "A quantitati..."
            ],
            [
                "P0DP23-1...",
                "Quantitative..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P0DP23-1",
                "A quantitative atlas of mitotic phosphorylation.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2008 Aug 5",
                "Dephoure N, Zhou C, Villen J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP",
                "protein_xref_pubmed",
                "18669648",
                "protein_xref_uniprotkb",
                "P0DP23"
            ],
            [
                "P0DP23-1",
                "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.",
                "Science signaling",
                "2009 Aug 18",
                "Mayya V, Lundgren DH, Hwang SI, Rezaul K, Wu L, Eng JK, Rodionov V, Han DK",
                "protein_xref_pubmed",
                "19690332",
                "protein_xref_uniprotkb",
                "P0DP23"
            ]
        ]
    },
    "readme": "Name\n   - Human Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2021-10-15T08:00:04.645468\n\nModified on\n   - 2024-05-17T11:24:06.352Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Proteoform Phosphorylation Citations (UniProtKB) dataset contains human [taxid:9606] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: human_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: human_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"6122\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"919\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"150\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"774\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"919\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"919\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"6125\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/human_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}