{
    "bcoid": "GLY_000600",
    "title": "Glycan NCFG",
    "description": "-",
    "filename": "glycan_ncfg.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "evidence NCFG"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Drosophila melanogaster",
            "Homo sapiens",
            "Mus musculus",
            "Rattus norvegicus",
            "Rattus",
            "Sus scrofa",
            "Severe acute respiratory syndrome coronavirus 2"
        ]
    },
    "minitable": {
        "content": [
            [
                "G39213VZ...",
                "GlcNAcb1-2Ma..."
            ],
            [
                "G29011JC...",
                "GlcNAcb1-2Ma..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "sequence..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "sequence"
                },
                {
                    "type": "string",
                    "label": "tag"
                },
                {
                    "type": "string",
                    "label": "evidence"
                },
                {
                    "type": "string",
                    "label": "source"
                }
            ],
            [
                "G39213VZ",
                "GlcNAcb1-2Mana1-6(GlcNAcb1-2Mana1-3)Manb1-4GlcNAcb1-4GlcNAcb1-Asn",
                "Chemo-enzymatic synthesis",
                "30745240",
                "Richard Cummings Laboratory (NCFG BIDMC Harvard Medical School)"
            ],
            [
                "G29011JC",
                "GlcNAcb1-2Mana1-6(GlcNAcb1-4(GlcNAcb1-2)Mana1-3)Manb1-4GlcNAcb1-4GlcNAcb1-Asn",
                "Chemo-enzymatic synthesis",
                "30745240",
                "Richard Cummings Laboratory (NCFG BIDMC Harvard Medical School)"
            ]
        ]
    },
    "readme": "Name\n   - Glycan NCFG\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2021-10-15T07:01:02.756996\n\nModified on\n   - 2024-05-17T11:24:06.075Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Richard Cummings [rcummin1@bidmc.harvard.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - -\n   - The dataset provides evidence for a library of complex multiantennary Asn-linked N-glycans generated by chemo-enzymatic synthesis (PMID:30745240).  The data was contributed by the Richard Cummings Laboratory (NCFG BIDMC Harvard Medical School).\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - Evidence\n   - NCFG\n\n   Pipeline Steps\n   - Step-1: \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/glycan_masterlist.csv\n      Name: glycan_evidence_ncfg.csv\n      URI: https:/data.glygen.org/ln2downloads/ncfg/09_01_2020/glycan_evidence_ncfg.csv\n   Output Subdomain\n      Name: glycan_ncfg.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/glycan_ncfg.csv\n      Name: glycan_ncfg.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/glycan_ncfg.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"38\"\n      Name: \"sequence\"\n     Description: \"Sequence\"\n      Unique Values: \"38\"\n      Name: \"tag\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"evidence\"\n     Description: \"NCBI PubMed Id (PMID) or DOI (Digital Object Identifier) as evidence for the entry/annotation\"\n      Unique Values: \"1\"\n      Name: \"source\"\n     Description: \"Source for the data\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/glycan_ncfg.csv"
}