{
    "bcoid": "GLY_000575",
    "title": "Human Proteoform Glycation Citations (UniProtKB)",
    "description": "The Human Proteoform Glycation Citations (UniProtKB) dataset contains human [taxid:9606] publication ...",
    "filename": "human_proteoform_citations_glycation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycation Citations (UniProtKB)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P68871-1...",
                "Sites of non..."
            ],
            [
                "Q16236-1...",
                "The Oncogeni..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P68871-1",
                "Sites of nonenzymatic glycosylation of human hemoglobin A.",
                "The Journal of biological chemistry",
                "1980 Apr 10",
                "Shapiro R, McManus MJ, Zalut C, Bunn HF",
                "protein_xref_pubmed",
                "7358733",
                "protein_xref_uniprotkb_gly",
                "P68871"
            ],
            [
                "Q16236-1",
                "The Oncogenic Action of NRF2 Depends on De-glycation by Fructosamine-3-Kinase.",
                "Cell",
                "2019 Aug 8",
                "Sanghvi VR, Leibold J, Mina M, Mohan P, Berishaj M, Li Z, Miele MM, Lailler N, Zhao C, de Stanchina E, Viale A, Akkari L, Lowe SW, Ciriello G, Hendrickson RC, Wendel HG",
                "protein_xref_pubmed",
                "31398338",
                "protein_xref_uniprotkb_gly",
                "Q16236"
            ]
        ]
    },
    "readme": "Name\n   - Human Proteoform Glycation Citations (UniProtKB)\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2021-06-04T12:34:52.072705\n\nModified on\n   - 2024-05-17T11:24:05.260Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Proteoform Glycation Citations (UniProtKB) dataset contains human [taxid:9606] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_proteoform_glycation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_proteoform_glycation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_proteoform_citations_glycation_sites_uniprotkb.csv\n      Name: human_proteoform_citations_glycation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_proteoform_citations_glycation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"12\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"15\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"12\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"15\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"15\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"15\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"12\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/human_proteoform_citations_glycation_sites_uniprotkb.csv"
}