{
    "bcoid": "GLY_000272",
    "title": "Rat N-Glycosylation Sequon",
    "description": "The Rat N-Glycosylation Sequon dataset contains N-glycosylation sequon or motif or consensus sequence ...",
    "filename": "rat_protein_glycosylation_motifs.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "N-Glycosylation Sequon"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "D3ZB44-1...",
                "93..."
            ],
            [
                "D3ZB44-1...",
                "112..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "start_pos..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "motif"
                }
            ],
            [
                "D3ZB44-1",
                "93",
                "95",
                "NRT"
            ],
            [
                "D3ZB44-1",
                "112",
                "114",
                "NYS"
            ]
        ]
    },
    "readme": "Name\n   - Rat N-Glycosylation Sequon\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2019-09-06T14:06:38.998256\n\nModified on\n   - 2024-06-03T20:36:54.538Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat N-Glycosylation Sequon dataset contains N-glycosylation sequon or motif or consensus sequence for Rattus norvegicus [taxid:10116] UniProtKB canonical sequences identified by the script. The script identifies the N-glycosylation sequon pattern - Asn-X-Ser/Thr , where X is any amino acid except proline (Pro) for UniProtKb accessions. If you use this dataset please provide proper attribution to GlyGen.\n\nDescription Domain\n   Keywords\n   - n-glycosylation sequon\n   - NXS/T\n   - n-glycosylation motif\n   - n-glycosylation consensus sequence\n\n   Pipeline Steps\n   - Step-1: The script uses the PS Scan tool (accession- PS00001) from ProSite to extracts the N-glycosylation pattern/sequon/motif N-{P}-[ST]-{P} where P is not a proline from the UniProtKB canonical sequences. More info -  https://prosite.expasy.org/PDOC00001, https://prosite.expasy.org/PS00001 and extracts as a csv.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_protein_canonicalsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_protein_canonicalsequences.fasta\n      Name: prosite.dat\n      URI: https:/data.glygen.org/ln2downloads/prosite/prosite.dat\n   Output Subdomain\n      Name: rat_protein_glycosylation_motifs.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_protein_glycosylation_motifs.csv\n      Name: rat_protein_glycosylation_motifs.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_protein_glycosylation_motifs.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"16993\"\n      Name: \"start_pos\"\n     Description: \"Start position of the gene on the chromosome\"\n      Unique Values: \"3643\"\n      Name: \"end_pos\"\n     Description: \"End position of the gene on the chromosome\"\n      Unique Values: \"3643\"\n      Name: \"motif\"\n     Description: \"Glycan motif\"\n      Unique Values: \"39\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/rat_protein_glycosylation_motifs.csv"
}