{
    "bcoid": "GLY_000258",
    "title": "Homolog Clusters",
    "description": "The Homolog Clusters dataset contains homologs of organisms present in GlyGen mapped to UniProtKB canonical ...",
    "filename": "protein_homolog_clusters.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus",
            "Homo sapiens",
            "Rattus norvegicus",
            "Saccharomyces cerevisiae S288C",
            "Drosophila melanogaster",
            "Severe acute respiratory syndrome coronavirus 2",
            "Severe acute respiratory syndrome-related coronavirus",
            "Hepatitis c virus (isolate h77)",
            "Hepatitis C virus (isolate Japanese)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Homologs"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "46358039...",
                "Q06985-1..."
            ],
            [
                "46358039...",
                "Q8IUQ4-1..."
            ]
        ],
        "headers": [
            "homolog_clus...",
            "uniprotkb_ca..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "homolog_cluster_id"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "tax_id"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "46358039",
                "Q06985-1",
                "10090",
                "protein_xref_mgi_homologset",
                "46358039"
            ],
            [
                "46358039",
                "Q8IUQ4-1",
                "9606",
                "protein_xref_mgi_homologset",
                "46358039"
            ]
        ]
    },
    "readme": "Name\n   - Homolog Clusters\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2019-09-06T14:06:38.985197\n\nModified on\n   - 2024-05-17T11:23:53.977Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Homolog Clusters dataset contains homologs of organisms present in GlyGen mapped to UniProtKB canonical accessions. The homologs data is downloaded from OMA browser and MGI. If you use this dataset please provide proper attribution to MGI, OMA Browser and GlyGen. \n\nDescription Domain\n   Keywords\n   - homologs\n   - orthologs\n   - MGI\n   - OMA\n\n   Pipeline Steps\n   - Step-1: The script extracts the human, mouse and rat homologs from the input files and using xref files, maps the identifiers to UniProtKB canonical accessions. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: protein_homolog_clusters.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/compiled/protein_homolog_clusters.csv\n      Name: chicken_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_protein_masterlist.csv\n      Name: chicken_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_protein_transcriptlocus.csv\n      Name: chicken_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_protein_xref_geneid.csv\n      Name: chicken_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/chicken_protein_xref_oma.csv\n      Name: dicty_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/dicty_protein_masterlist.csv\n      Name: dicty_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/dicty_protein_xref_geneid.csv\n      Name: dicty_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/dicty_protein_xref_oma.csv\n      Name: fruitfly_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/fruitfly_protein_masterlist.csv\n      Name: fruitfly_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/fruitfly_protein_transcriptlocus.csv\n      Name: fruitfly_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/fruitfly_protein_xref_geneid.csv\n      Name: fruitfly_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/fruitfly_protein_xref_oma.csv\n      Name: hcv1a_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/hcv1a_protein_masterlist.csv\n      Name: hcv1b_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/hcv1b_protein_masterlist.csv\n      Name: human_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_protein_masterlist.csv\n      Name: human_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_protein_transcriptlocus.csv\n      Name: human_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_protein_xref_geneid.csv\n      Name: human_protein_xref_hgnc.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_protein_xref_hgnc.csv\n      Name: human_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/human_protein_xref_oma.csv\n      Name: mouse_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/mouse_protein_masterlist.csv\n      Name: mouse_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/mouse_protein_transcriptlocus.csv\n      Name: mouse_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/mouse_protein_xref_geneid.csv\n      Name: mouse_protein_xref_mgi.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/mouse_protein_xref_mgi.csv\n      Name: mouse_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/mouse_protein_xref_oma.csv\n      Name: pig_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/pig_protein_masterlist.csv\n      Name: pig_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/pig_protein_transcriptlocus.csv\n      Name: pig_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/pig_protein_xref_geneid.csv\n      Name: pig_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/pig_protein_xref_oma.csv\n      Name: rat_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_protein_masterlist.csv\n      Name: rat_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_protein_transcriptlocus.csv\n      Name: rat_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_protein_xref_geneid.csv\n      Name: rat_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_protein_xref_oma.csv\n      Name: sarscov1_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/sarscov1_protein_masterlist.csv\n      Name: sarscov1_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/sarscov1_protein_xref_geneid.csv\n      Name: sarscov2_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/sarscov2_protein_masterlist.csv\n      Name: sarscov2_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/sarscov2_protein_xref_geneid.csv\n      Name: yeast_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/yeast_protein_masterlist.csv\n      Name: yeast_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/yeast_protein_transcriptlocus.csv\n      Name: yeast_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/yeast_protein_xref_geneid.csv\n      Name: yeast_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/yeast_protein_xref_oma.csv\n      Name: mgi_homologs.tsv\n      URI: https:/data.glygen.org/ln2downloads/mgi/2024_04_03/mgi_homologs.tsv\n   Output Subdomain\n      Name: protein_homolog_clusters.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/protein_homolog_clusters.csv\n      Name: protein_homolog_clusters.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/protein_homolog_clusters.stat.csv\n\nFields\n      Name: \"homolog_cluster_id\"\n     Description: \"NA\"\n      Unique Values: \"41068\"\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"84084\"\n      Name: \"tax_id\"\n     Description: \"NCBI Taxonomy database Identifier\"\n      Unique Values: \"12\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"4\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"41067\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/protein_homolog_clusters.csv"
}