{ "bcoid": "GLY_000240", "title": "Rat Protein Canonical sequences (UniProtKB)", "description": "The Rat Protein Canonical Sequences (UniProtKB) dataset contains Rattus norvegicus [taxid:10116] canonical ...", "filename": "rat_protein_canonicalsequences.fasta", "filetype": "fasta", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Canonical Protein fasta Sequences" ], "file_type": [ "fasta" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "iconfilename": "fasta_icon_all.png", "sampledata": { "type": "html", "data": "
\n>tr|D3ZB44-1|D3ZB44_RAT Isoform 1 of Zinc finger protein 324 OS=Rattus norvegicus OX=10116 GN=Zfp324 PE=4 SV=1 CANONICAL=D3ZB44-1\nMPRSPARRAPPPLQIPMAVTWPLTDPARGLMAFEDVAVYFSQEEWMFLNAAQRALYRHVM\nLENFALVDSIGPSVSRPRVIIQLQRGEEPWVPNRTIAGPGRGTHRRSSLGSNYSARDRHV\nSGASPGATCDRPVRISTSLLPPAGAYPDAKILEGHQSACPSLQKKPTGVSVIYWEQLLLG\nSSSSEATVSLRLTSPVGVPENGSSRVKAFSDLLAPGKQLRVAEQQKPEMQLNPGRTFQSI\nPDLHEAEEGHGISGACHESQGDPSVPEAPIWDELGEALQAGPGLFSGDKPFECRACNKVF\nVKSSDLLKHLRTHTGERPYECAQCGKAFSQTSHLTQHQRIHSGETPYVCMVCSKAFRHSS\nSLVRHQRIHTVEKTFHCNECGKAFSHGSNLSQHRKIHAGGRPYACAQCGRRFCRNSHLIQ\nHERTHTGEKPYACSLCGAAFSQGSSLFKHQRVHTGEKPFSCPQCGRAFSHSSNLTQHQLL\nHTGERPFRCGDCGKAFAKGAVLLSHRRIHTGEKPFVCTQCGRAFRERPALFHHQRIHTGE\nKALRRPRGNMHSQIGSLGVSLDGTHPKATLDPPAVPNIAEA\n\n\n>tr|M0R9X4-1|A0A0G2JZX0_RAT Isoform 1 of Zinc finger, ZZ-type containing 3 OS=Rattus norvegicus OX=10116 GN=Zzz3 PE=4 SV=3 CANONICAL=M0R9X4-1\nMVGTCHSMAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKR\nPEPVPILKGNNNGRTSDVKQQSAREWVSPRKRRLSSSEKDDLERQALESCERRQAEPALP\nVLKNIKRCLRAEATNSSEEDSPVKPDKEPVEIRRTVVDHDAEFQGAKRACRCLILDDCEK\nREVKKVNVSEEGPLNAAVLEEITGYLTVNGVDDSDSAVINCDDCQPDRNTKQNSPGSCVL\nQEESVAGDGDSETQTSVFCGSGKEDSCIDHFVPCTKSDVQVKLEDHKLVTACLPVERRSQ\nLTAESASGPVSEVQSSLRDSEEEVDVVGDSSASKEQCNENSSDPLDTGSECLPASGEPEL\nSSMLDCVSAQMTSLSEPQEHRYTLRTSPRRAAQTRGSPTKNTSPYRENGQFEENNLSPNE\nTNTTASDNVSESPTNPVEISQDEKVLCCDSENYGSEGLSKPSSEARMNIGHLPSAKESAS\nQHTAEEEDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGKHQREA\nLKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTSSLGNFEREFKHRKRHTRRVKLV\nFDKGLPARPKSPLDPKKDGDSLSYSMLPLSDGPEGSHHRPQMIRGRLCDDSKPETFNQLW\nTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPG\nRTPNLYIYSRKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDERSCPHSHMSTAVEE\nASDEESIPVIYRSLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGVEPIQGVR\nWHCQDCPPEMSLDFCDSCSDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTSYSYLD\nPNYFPANR\n\n\n>tr|D3ZB41-1|D3ZB41_RAT Isoform 1 of Zinc finger protein 28 OS=Rattus norvegicus OX=10116 GN=Zfp78 PE=3 SV=3 CANONICAL=D3ZB41-1\nMSVTNVAKPSRILPTSYDIRGFTLERSRTNVLSVGRHLVTAPPALSIRDFTLVRGPTRVR\nDVEGRSEQSHPLIATRAVTPERNRKTVSPVANPLAADKPGAFTREFSFQPDCSRGRFHRS\nQRALGNARDGETSSQMFLNHPSLGLVTFGDVAVVFSQEEWEWLTSEQRSLYWKVMLDNYR\nNLASLGLCASKPDMIALLEQGTDPWMMGRGRCTDLKAVQETKELPPKDLSEETSQAVLRR\nRLLHRRPMCYMSGASWGGDAVFKAQRGSKTNSDMARDSPPELVSAQKNFRKNATWENCDD\nLGLLGQQSVQEAQDSLPRQDSHAGRVTGSTWSTERACSAFRGDRDSECVFERNGQDTAFE\nSQNRAFSEGRDGVCLNSGRWFHLNSSEERSHNCDSGKTSLPNPTVIKETRIYSGKKLFKC\nNECKKTFTQSSSLTVHQRIHTGEKPYKCNECGKAFSDGSSFARHQRCHTGKKPYECLECG\nKAFIQNTSLVRHWRYYHTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPYTCDVCHKSF\nRYGSSLTVHQRIHTGEKPYECEICRKAFSHHASLTQHQRVHSGEKPFKCKECGKAFRQNI\nHLASHLRIHTGEKPFECGDCGKSFSISSQLATHQRIHTGEKPYECKVCNKAFTQKAHLAQ\nHQKTHTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPYKCLECGKAFGDNSSCTQHQRL\nHTGQRPYECVECGKAFKTKSSLICHRRCHTGEKPYECSACGKAFSHRQSLSVHQRIHSGK\nKPYECKECRKTFIQIGHLNQHKRVHAGERTYNCRKGRRAFRQIARFAHHQRIHSGELPAH\nPTLPSTSNPVDLFSKFVWNPSSLSSS\n\n\n>sp|P09812-1|A0A8I6G867_RAT Isoform 1 of Alpha-1,4 glucan phosphorylase OS=Rattus norvegicus OX=10116 GN=Pygm PE=1 SV=5 CANONICAL=P09812-1\nMSRPLSDQDKRKQISVRGLAGVENVSDLKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV\nRDHLVDRWIRTQQHYYAKDPKRIYYLSLELYMGRTLQNTMVNLALENACDEATYQLGLDM\nEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA\nDDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVN\nTMRLWSAKAPPYFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDKFFEGKELRLKQEYFV\nVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELIRILVDLERL\nDWDKAWDVTVKTCAYTNHTVLPEALERWPVHLMETLLPRHLQIIYEINQRFLNRVAAAFP\nGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKF\nQNKTNGITPRRWLVLCNPGLAEVIAERIGEEYISDLDQLRKLLSYLDDQAFIRDVAKVKQ\nENKLKFSAYLETEYKVHINPNSLFDVQVKRIHEYKRQLLNCLHIITLYNRIKREPNRFMV\nPRTIMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPAVGDRFRVIFLENYRVSLAEKVIPA\nADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEDNFFIFGMRVEDVE\nRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMVMHHDRFKVFADYEE\nYIKCQDKVSELYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGLEPSRQRLPAPDE\nKI\n\n\n>tr|D3ZB49-1|D3ZB49_RAT Isoform 1 of Oxidative stress induced growth inhibitor family member 2 OS=Rattus norvegicus OX=10116 GN=Osgin2 PE=4 SV=1 CANONICAL=D3ZB49-1\nMPVWCCRCSLAGHFRNYSDTETEGEIFNSLVQYLGDNLGPKVKGMPLVEETSLLEDSSVT\nLPMVIIGNGPSGICLSYMLSGYRPYLSSEAIHPNAILHSKLEEARHLSIVDQDLEYLSEG\nLEGRSSNPVAVLFDTLLHPDADFGYDSPSILHWKLEQHHSIPHLVLGKGPPGGAWHNMEG\nSMLTISFGNWMELPGLKFKDWISSKRRNLKGDRVMPEEIARYYKHYVKVMGLQKNFRENT\nYITSVSRLYRDQGDNGSQDRDISAKHLQNQKSKFIKRNWEIRGYQRVAGGSHVPFCLFAE\nNVALATGTLDSPAHLEVEGEEFPFVFHSMPEFGAAINSGKLCGRVDPVLIVGSGLTAADA\nVLCAYNNNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSADSDHLSDYT\nSFPEHRVLSFKSDMKCILQSVSGLKKIFKLSAAVILIGSHPNLSFLKEQGCYLGRNSSQP\nISCKGNPVEIDAYTYECVKEANLFALGPLVGDNFVRFLKGGALGVTRCLVTRQKKKQHLF\nVQRGGGDGVA\n\n\n>tr|D3ZB48-1|D3ZB48_RAT Isoform 1 of Hook microtubule-tethering protein 1 OS=Rattus norvegicus OX=10116 GN=Hook1 PE=1 SV=1 CANONICAL=D3ZB48-1\nMEDPQPLPQPELPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWL\nSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITESSDPVELGRL\nLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKEIVSSPASDAVGELEQQL\nKRALEELQEALAEKEELKQRCQELDMQVTALQDEKNSLVSENEMMNEKLDQLDGSFDDPN\nTMVAKKYFHVQLQLEQLQEENYRLEAAKDDYRVHCEELEKQLIEFQHRNDELTSLAEETR\nALKDEIDVLRATSDKANKLESTVEVYRQKLQDLNDLRKQVKSLQETNMMYMHNTVSLEEE\nLKKANAARAQLETYKRQVQDLHTKLSSESKRADTLAFEMKRLEEKHETLLKEKERLIEQR\nDTLKETNEELRCSKAQQDHLNQADSSATKSYENLAAEIMPVEYREVFIRLQHENKMLRLQ\nQEGTENERIEQLQEQLEQKHRKMNELETEQRLSKERIGELQQQIEDLQKSLQEQGSKSEG\nESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDISQNAQKISELEAALQKKDEDMK\nAMEERYKMYLEKARNVIKTLDPKLNPASAEIMLLRKQLAEKDRRIEILESECKVAKFRDY\nEEKLIVSAWYNKSLAFQKLGMESRLVSGASACKDSVAAAPARSFLAQQRHITSTRRNLSV\nKVPAAASD\n\n\n>tr|A0A8I6GJS8-1|A0A8I6A4J1_RAT Isoform 1 of Lymphocyte antigen 9 OS=Rattus norvegicus OX=10116 GN=Ly9 PE=4 SV=1 CANONICAL=A0A8I6GJS8-1\nMADLKRYWCERALDAFSEKTRKSQQQIFSPILWIPLLFLLMGLGASGKETPPRVISGILG\nGSVTFPLNISINAEIELITWTYLSKTLVLAITSRSGITILLKEYSGRLNISQDGYSLCMS\nNLTKSDSGSYQAQIIQKNVDHTVRNEFILHIYEQLQEPQVTVKSMTSSENDSCTVTLICT\nVNGSKDGVQYSWIQKDTHNKTSHESHILRVSPSACDPDLPYTCTARNPVSQNSSQPVRVR\nQFCTGTSRKKTTGKTVIGILGEPVTLSLEFPASEETKNVVWVFNTSVISQEPKGAATVDP\nHRHKSKSSEERRLRISDQDSSLKISQLKMEDTGPYHAYVCSETSRGPSVRHFTLLVYQRL\nKKPNVTQSPVHMTNGICEVVLTCSVEGGEKDVRYTWMPLQKETVMSQGKSHLNVSWKIGE\nRLPNFTCTTHNPVSNSSRQLSSGSLCSGPERNKRLWILLLLGLFLGMLIGGCFILKKRKL\nCSSLAIRNSQAKVPAEIPETPAGHIGFSVLSQQYEKLDMPAKTIRHHSTSTSDTSSESSA\nTTEEDDEKTRMHSTVNGRSQVYDLFTQEDIAHDLASEGQAEYEAVSPDDKVAKSMDEEDT\nAYTQESLIVQGENPLPQKKEGSNTIYCSLQKHKTMVQTPQQDTESPETPTYENFT\n\n\n>sp|F1LX07-1|A0A8W1B2M1_RAT Isoform 1 of Solute carrier family 25 member 12 OS=Rattus norvegicus OX=10116 GN=Slc25a12 PE=1 SV=5 CANONICAL=F1LX07-1\nMAVKVHTTKRGDPHELRNIFLQYASTEVDGEHYMTPEDFVQRYLGLYNDPNSNPKIVQLL\nAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTII\nHHHIPFNWDCEFIRLHFGHNRKKHLNYVEFTQFLQELQLEHARQAFALKDKSKSGMISGL\nDFSDVMVTIRSHMLTPFVEENLVSAAGGSTSHQVSFSYFNAFNSLLNNMELVRKIYSTLA\nGTRKDIEVTKEEFASAITYGVVTPINVGILYFINNVHISTGRLTLADIERIAPLAEGALP\nYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPIDLVKTRMQNQRGTG\nSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRD\nGSIPLPAEILAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLQDLGLFGLY\nKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGINLLTAGAMAGVPAASLVTPADV\nIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELL\nQRWFYIDFGGLKPSGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFK\nSPGVAAAQPKVAAAAQ\n\n\n>sp|Q5RJZ1-1|A0A0G2JVG0_RAT Isoform 1 of Regulator of telomere elongation helicase 1 OS=Rattus norvegicus OX=10116 GN=Rtel1 PE=3 SV=2 CANONICAL=Q5RJZ1-1\nMPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWR\nEHLRDAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLT\nQVIGELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEE\nKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNI\nDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQQEFI\nIDTSSSGLNMELEDIAKLKMILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQ\nTKGCILESLDQIIQHLTGRTGVFTNTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHF\nYKVHIHPETSHRRAAQRSDAWSTTASRKQGKVLSYWCFSPSHSMRELVQQGVRTLILTSG\nTLAPLSSFALEMQIPFPVCLENPHIIDKNQLWVGVIPRGPDGVQLSSAYDKRFSEECLSS\nLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQGMSKKVEALKPLFVEPRNKGSFSE\nVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVILKM\nQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAYADA\nRAHLPSWVRPYLKVYDNFGRVIRDVAQFFRVAQKAMPLPVPQAVTSSVSEGEAAVKEATL\nSSHSLSTRKAMSLDVHVPSLRRRPVGLPTAGDSESSVCVEYEQQTFSAQKRPMGLLAALE\nYNEQKAGASEEQALSSSTPSLRCEKRLSVEQRGGKKKVRLVNHPEEPVAGTQAGRAKMFM\nVAVKQALSQANFDTFTQALQHYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHH\nKQQFEDICFQLTGQRCSYQPGNSLPFGEQAQSTASKQGRRELESKLTLSEGADRQLDPGE\nHLNQGWPHLSTHLTSKGDTSNCPKVGCVGEKPGQPAVNDYLSDVHKALGSASCNQLTAAL\nRAYKQDDDLDKVLAVVAALTTAKPEHLSLLQRFGMFIRRHHKPRFVQTCADLMGLPTIGK\nGLELPCPRDESTTVPSELTHEDMKPGPSTSKKPEKTQSKISSFLRQRPDQSARSDDTIMQ\nLPPRLPPEHTTSQWNFVCPACATEDTVLFQCPSCDFCRCRACWQRQLQASRLCPACGAVN\nRKQSIAQVIWPKPQ\n\n\n
" }, "readme": "Name\n - Rat Protein Canonical sequences (UniProtKB)\n\nVersion\n - v-2.5.1\n\nCreated on\n - 2019-09-06T14:06:38.967574\n\nModified on\n - 2024-06-03T20:27:27.040Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Canonical Sequences (UniProtKB) dataset contains Rattus norvegicus [taxid:10116] canonical protein fasta sequences from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n Keywords\n - protein sequence\n - fasta\n - UniProtKB canonical accessions\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB fasta sequence for all rat canonical accessions data from the triplestore containing triples from nt file and extracts dataset in a fasta format. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_04_08/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_canonicalsequences.fasta\n URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_protein_canonicalsequences.fasta\n Name: rat_protein_canonicalsequences.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/rat_protein_canonicalsequences.stat.csv\n\nFields\n Name: \"sequence\"\n Description: \"Amino acid sequence\"\n Unique Values: \"22401\"", "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/rat_protein_canonicalsequences.fasta" }