{
    "bcoid": "GLY_000139",
    "title": "Mouse Proteoform Citations (UniCarbKB)",
    "description": "The Mouse Proteoform Citations (UniCarbKB) contains mouse [taxid:10090] publication information of glycoproteins ...",
    "filename": "mouse_proteoform_citations_glycosylation_sites_unicarbkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q09163-1...",
                "Glycosylatio..."
            ],
            [
                "P04925-1...",
                "Site-specifi..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "Q09163-1",
                "Glycosylation analysis and protein structure determination of murine fetal antigen 1 (mFA1)--the circulating gene product of the delta-like protein (dlk), preadipocyte factor 1 (Pref-1) and stromal-cell-derived protein 1 (SCP-1) cDNAs.",
                "European journal of biochemistry",
                "1997 Mar 1",
                "Krogh TN, Bachmann E, Teisner B, Skjodt K, Hojrup P",
                "protein_xref_pubmed",
                "9118998",
                "protein_xref_unicarbkb_ds",
                "GLY_000041",
                "G01614ZM"
            ],
            [
                "P04925-1",
                "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.",
                "Biochemistry",
                "1999 Apr 13",
                "Stimson E, Hope J, Chong A, Burlingame AL",
                "protein_xref_pubmed",
                "10200178",
                "protein_xref_unicarbkb_ds",
                "GLY_000041",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Mouse Proteoform Citations (UniCarbKB)\n\nVersion\n   - v-2.5.1\n\nCreated on\n  - 2019-04-16T16:44:35.331041\n\nModified on\n   - 2024-05-17T11:23:52.440Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Proteoform Citations (UniCarbKB) contains mouse [taxid:10090] publication information of glycoproteins from UniCarbKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniCarbKB. . The dataset is contributed by UniCarbKB and processed by GlyGen. If you use this dataset please provide proper attribution to UniCarbKB and GlyGen [UniCarbKB - https://academic.oup.com/nar/article/42/D1/D215/1052197 ,https://doi.org/10.1093/nar/gkt1128]. \n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniCarbKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_proteoform_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv\n   Output Subdomain\n      Name: mouse_proteoform_citations_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/mouse_proteoform_citations_glycosylation_sites_unicarbkb.csv\n      Name: mouse_proteoform_citations_glycosylation_sites_unicarbkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.5.1/reviewed/mouse_proteoform_citations_glycosylation_sites_unicarbkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"21\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"8\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"6\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"8\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"8\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"8\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"72\"",
    "downloadurl": "/ln2data/releases/data/v-2.5.1/reviewed/mouse_proteoform_citations_glycosylation_sites_unicarbkb.csv"
}