{ "bcoid": "GLY_000957", "title": "Pig Glycohydrolases", "description": "The Pig Glycohydrolases dataset contains a list of Sus scrofa [taxid:1758] glycohydrolases derived from ...", "filename": "pig_protein_glycohydrolase.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tag": [ "Glycohydrolases" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A5PF10-1...", "Sus scrofa (..." ], [ "O02773-1...", "Sus scrofa (..." ] ], "headers": [ "uniprotkb_ca...", "species..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "species" }, { "type": "string", "label": "status" }, { "type": "string", "label": "gene_symbol" }, { "type": "string", "label": "uniprotkb_protein_name" }, { "type": "string", "label": "ec_number" }, { "type": "string", "label": "brenda_ec_number" }, { "type": "string", "label": "cazy_gh_family" }, { "type": "string", "label": "interpro_id" }, { "type": "string", "label": "pfam_ac" }, { "type": "string", "label": "go_molecular_function" } ], [ "A5PF10-1", "Sus scrofa (Pig)", "reviewed", "NEU1", "Sialidase-1 (EC 3.2.1.18) (Acetylneuraminyl hydrolase) (Lysosomal sialidase) (N-acetyl-alpha-neuraminidase 1)", "3.2.1.18", "", "GH33", "IPR011040|IPR026856|IPR036278", "PF13088", "exo-alpha-(2->3)-sialidase activity [GO:0052794]; exo-alpha-(2->6)-sialidase activity [GO:0052795]; exo-alpha-(2->8)-sialidase activity [GO:0052796]; exo-alpha-sialidase activity [GO:0004308]" ], [ "O02773-1", "Sus scrofa (Pig)", "reviewed", "MAN1A1", "Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA (EC 3.2.1.113) (Man(9)-alpha-mannosidase) (Man9-mannosidase) (Mannosidase alpha class 1A member 1) (Processing alpha-1,2-mannosidase IA) (Alpha-1,2-mannosidase IA)", "3.2.1.113", "", "GH47", "IPR012341|IPR001382|IPR036026", "PF01532", "calcium ion binding [GO:0005509]; mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [GO:0004571]" ], [ "P00690-1", "Sus scrofa (Pig)", "reviewed", "AMY2", "Pancreatic alpha-amylase (PA) (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase)", "3.2.1.1", "3.2.1.1", "GH13", "IPR006048|IPR031319|IPR006046|IPR006047|IPR013780|IPR017853", "PF00128|PF02806", "alpha-amylase activity [GO:0004556]; calcium ion binding [GO:0005509]; chloride ion binding [GO:0031404]" ], [ "P79403-1", "Sus scrofa (Pig)", "reviewed", "GANAB", "Neutral alpha-glucosidase AB (EC 3.2.1.207) (Alpha-glucosidase 2) (Glucosidase II subunit alpha)", "3.2.1.207", "", "GH31", "IPR011013|IPR030458|IPR048395|IPR030459|IPR025887|IPR000322|IPR013780|IPR017853", "PF13802|PF01055|PF21365", "alpha-glucosidase activity [GO:0090599]; carbohydrate binding [GO:0030246]; glucan 1,3-alpha-glucosidase activity [GO:0033919]" ], [ "Q29548-1", "Sus scrofa (Pig)", "reviewed", "HEXB", "Beta-hexosaminidase subunit beta (EC 3.2.1.52) (65 kDa epididymal boar protein) (Beta-N-acetylhexosaminidase subunit beta) (Hexosaminidase subunit B) (N-acetyl-beta-glucosaminidase subunit beta)", "3.2.1.52", "", "GH20", "IPR025705|IPR015883|IPR017853|IPR029018|IPR029019", "PF00728|PF14845", "beta-N-acetylhexosaminidase activity [GO:0004563]; N-acetyl-beta-D-galactosaminidase activity [GO:0102148]" ], [ "Q6RHW4-1", "Sus scrofa (Pig)", "reviewed", "HYAL1", "Hyaluronidase-1 (Hyal-1) (EC 3.2.1.35) (Hyaluronoglucosaminidase-1)", "3.2.1.35", "3.2.1.35", "GH56", "IPR013785|IPR017853|IPR018155", "PF01630", "hyaluronan synthase activity [GO:0050501]; hyalurononglucosaminidase activity [GO:0004415]" ], [ "Q70KH2-1", "Sus scrofa (Pig)", "reviewed", "GBA1", "Lysosomal acid glucosylceramidase (EC 3.2.1.45) (Acid beta-glucosidase) (Beta-glucocerebrosidase) (Cholesterol glucosyltransferase) (SGTase) (EC 2.4.1.-) (Cholesteryl-beta-glucosidase) (EC 3.2.1.-) (D-glucosyl-N-acylsphingosine glucohydrolase) (Lysosomal cholesterol glycosyltransferase) (Lysosomal galactosylceramidase) (EC 3.2.1.46) (Lysosomal glycosylceramidase)", "2.4.1.-| 3.2.1.-| 3.2.1.45| 3.2.1.46", "3.2.1.45", "GH30", "IPR033452|IPR001139|IPR033453|IPR017853", "PF02055|PF17189", "galactosylceramidase activity [GO:0004336]; glucosylceramidase activity [GO:0004348]; glucosyltransferase activity [GO:0046527]; steryl-beta-glucosidase activity [GO:0050295]" ], [ "P12067-1", "Sus scrofa (Pig)", "reviewed", "LYSC1", "Lysozyme C-1 (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase C)", "3.2.1.17", "", "GH22", "IPR001916|IPR019799|IPR000974|IPR023346", "PF00062", "lysozyme activity [GO:0003796]" ], [ "P12068-1", "Sus scrofa (Pig)", "reviewed", "LYSC2", "Lysozyme C-2 (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase C)", "3.2.1.17", "", "GH22", "IPR001916|IPR019799|IPR000974|IPR023346", "PF00062", "lysozyme activity [GO:0003796]" ], [ "P12069-1", "Sus scrofa (Pig)", "reviewed", "LYSC3", "Lysozyme C-3 (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase C)", "3.2.1.17", "", "GH22", "IPR001916|IPR019799|IPR000974|IPR023346", "PF00062", "lysozyme activity [GO:0003796]" ], [ "P50828-1", "Sus scrofa (Pig)", "reviewed", "HPX", "Hemopexin (Hyaluronidase) (EC 3.2.1.35)", "3.2.1.35", "", "", "IPR016358|IPR000585|IPR036375|IPR018487|IPR018486", "PF00045", "heme transmembrane transporter activity [GO:0015232]; hyalurononglucosaminidase activity [GO:0004415]; metal ion binding [GO:0046872]" ], [ "P56729-1", "Sus scrofa (Pig)", "reviewed", "SI", "Sucrase-isomaltase, intestinal [Cleaved into: Sucrase (EC 3.2.1.48); Isomaltase (EC 3.2.1.10)]", "3.2.1.10| 3.2.1.48", "", "", "", "", "oligo-1,6-glucosidase activity [GO:0004574]; sucrose alpha-glucosidase activity [GO:0004575]" ], [ "Q28949-1", "Sus scrofa (Pig)", "reviewed", "MAN2B2", "Epididymis-specific alpha-mannosidase (EC 3.2.1.24) (Mannosidase alpha class 2B member 2)", "3.2.1.24", "", "GH38", "IPR011013|IPR011330|IPR011682|IPR015341|IPR037094|IPR000602|IPR027291|IPR028995|IPR013780", "PF09261|PF07748|PF01074", "alpha-mannosidase activity [GO:0004559]; carbohydrate binding [GO:0030246]; metal ion binding [GO:0046872]" ], [ "Q4FAT7-1", "Sus scrofa (Pig)", "reviewed", "GUSB", "Beta-glucuronidase (EC 3.2.1.31)", "3.2.1.31", "", "GH2", "IPR036156|IPR008979|IPR006101|IPR023232|IPR006103|IPR023230|IPR006102|IPR006104|IPR017853|IPR013783", "PF00703|PF02836|PF02837", "beta-glucuronidase activity [GO:0004566]; carbohydrate binding [GO:0030246]; protein domain specific binding [GO:0019904]; signaling receptor binding [GO:0005102]" ], [ "Q6RHW2-1", "Sus scrofa (Pig)", "reviewed", "HYAL3", "Hyaluronidase-3 (Hyal-3) (EC 3.2.1.35) (Hyaluronoglucosaminidase-3)", "3.2.1.35", "3.2.1.35", "GH56", "IPR013785|IPR017853|IPR018155|IPR027260", "PF01630", "hyalurononglucosaminidase activity [GO:0004415]" ] ] }, "readme": "Name\n - Pig Glycohydrolases\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-01-23T17:21:05.892318\n\nModified on\n - 2024-03-29T16:56:09\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Jeet Vora [jeetvora@gwu.edu]\n\nChecksum\n - \n\nUsability Domain\n - The Pig Glycohydrolases dataset contains a list of Sus scrofa [taxid:1758] glycohydrolases derived from UniProtKB database using advanced search and other databases including CAZy, InterPro and Pfam. If you use this dataset please provide proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n Keywords\n - glycohydrolase\n - glycosidase\n - EC Number\n - CAZy\n\n Pipeline Steps\n - Step-1: The script maps and replaces the UniProtKb accession to the UniProtKB canonical accession\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: pig_protein_glycohydrolase.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/pig_protein_glycohydrolase.csv\n Name: pig_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_masterlist.csv\n Output Subdomain\n Name: pig_protein_glycohydrolase.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_glycohydrolase.csv\n Name: pig_protein_glycohydrolase.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_glycohydrolase.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"15\"\n Name: \"species\"\n Description: \"Species of the protein.\"\n Unique Values: \"1\"\n Name: \"status\"\n Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n Unique Values: \"1\"\n Name: \"gene_symbol\"\n Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n Unique Values: \"15\"\n Name: \"uniprotkb_protein_name\"\n Description: \"Name of the protein in UniProtKB database\"\n Unique Values: \"15\"\n Name: \"ec_number\"\n Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"11\"\n Name: \"brenda_ec_number\"\n Description: \"Enzyme Commission (EC) number assigned to enzyme in BRENDA database\"\n Unique Values: \"4\"\n Name: \"cazy_gh_family\"\n Description: \"\"\n Unique Values: \"11\"\n Name: \"interpro_id\"\n Description: \"InterPro Identifier\"\n Unique Values: \"13\"\n Name: \"pfam_ac\"\n Description: \"Accession assigned to the protein family in the Pfam database\"\n Unique Values: \"12\"\n Name: \"go_molecular_function\"\n Description: \"\"The elemental activities of a gene product at the molecular level\"\n Unique Values: \"13\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_glycohydrolase.csv" }