{
    "bcoid": "GLY_000953",
    "title": "Pig Proteoform Citations (GlyConnect)",
    "description": "The Pig Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...",
    "filename": "pig_proteoform_citations_glycosylation_sites_glyconnect.csv",
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        "status": [
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        "scope": [
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                "...",
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                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
                "European journal of biochemistry",
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                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
                "European journal of biochemistry",
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                "",
                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "",
                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "",
                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "Hokke C H, Damm J B, Penninkhof B, Aitken R J, Kamerling J P, Vliegenthart J F",
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                "",
                "Structure of the O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
                "European journal of biochemistry",
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                "Hokke C H, Damm J B, Penninkhof B, Aitken R J, Kamerling J P, Vliegenthart J F",
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                "Structure of three acidic O-linked carbohydrate chains of porcine zona pellucida glycoproteins.",
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                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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            [
                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
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            [
                "",
                "Structure determination of oligosaccharides isolated from A+, H+ and A-H- hog-submaxillary-gland mucin glycoproteins, by 360-MHz 1H-NMR spectroscopy, permethylation analysis and mass spectrometry.",
                "European journal of biochemistry",
                "1981-09-01",
                "Van Halbeek H, Dorland L, Haverkamp J, Veldink G A, Vliegenthart J F, Fournet B, Ricart G, Montreuil J, Gathmann W D, Aminoff D",
                "protein_xref_pubmed",
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                "391",
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            ],
            [
                "",
                "Porcine submaxillary mucin contains alpha 2----3- and alpha 2----6-linked N-acetyl- and N-glycolylneuraminic acid.",
                "European journal of biochemistry",
                "1986-10-01",
                "Savage A V, Koppen P L, Schiphorst W E, Trippelvitz L A, Van Halbeek H, Vliegenthart J F, Van den Eijnden D H",
                "protein_xref_pubmed",
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        ]
    },
    "readme": "Name\n   - Pig Proteoform Citations (GlyConnect)\n\nVersion\n   - v-2.4.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n   - \n\nUsability Domain\n   - The Pig Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID). The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - GlyConnect\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: pig_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_proteoform_glycosylation_sites_glyconnect.csv\n   Output Subdomain\n      Name: pig_proteoform_citations_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_proteoform_citations_glycosylation_sites_glyconnect.csv\n      Name: pig_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"9\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"28\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"12\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"28\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"28\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"28\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"15\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"338\"",
    "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_proteoform_citations_glycosylation_sites_glyconnect.csv"
}