{ "bcoid": "GLY_000949", "title": "Pig UniProtKB Xref CAZy", "description": "The Pig UniprotKB Xref CAZy contains pig [taxid:9823] UniProtKB canonical accessions cross-referenced ...", "filename": "pig_protein_xref_cazy.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "Cazy" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q6RHW2-1...", "protein_xref..." ], [ "Q6RHW4-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q6RHW2-1", "protein_xref_cazy", "GH56", "Glycoside Hydrolase Family 56" ], [ "Q6RHW4-1", "protein_xref_cazy", "GH56", "Glycoside Hydrolase Family 56" ], [ "Q75R37-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ], [ "Q10982-1", "protein_xref_cazy", "GT11", "Glycosyltransferase Family 11" ], [ "O19071-1", "protein_xref_cazy", "GT16", "Glycosyltransferase Family 16" ], [ "Q27HV0-1", "protein_xref_cazy", "GT41", "Glycosyltransferase Family 41" ], [ "Q6ITT3-1", "protein_xref_cazy", "GT54", "Glycosyltransferase Family 54" ], [ "P79403-1", "protein_xref_cazy", "GH31", "Glycoside Hydrolase Family 31" ], [ "A5GFW8-1", "protein_xref_cazy", "GT14", "Glycosyltransferase Family 14" ], [ "Q29121-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ], [ "Q29121-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q29548-1", "protein_xref_cazy", "GH20", "Glycoside Hydrolase Family 20" ], [ "Q28949-1", "protein_xref_cazy", "GH38", "Glycoside Hydrolase Family 38" ], [ "Q29043-1", "protein_xref_cazy", "GT11", "Glycosyltransferase Family 11" ], [ "A0A8D0USJ8-1", "protein_xref_cazy", "GT65", "Glycosyltransferase Family 65" ], [ "Q28990-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "Q864U6-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q864U8-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q70KH2-1", "protein_xref_cazy", "GH30", "Glycoside Hydrolase Family 30" ], [ "Q0KKC2-1", "protein_xref_cazy", "GT13", "Glycosyltransferase Family 13" ], [ "O02773-1", "protein_xref_cazy", "GH47", "Glycoside Hydrolase Family 47" ], [ "P00690-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "Q4FAT7-1", "protein_xref_cazy", "GH2", "Glycoside Hydrolase Family 2" ], [ "P50127-1", "protein_xref_cazy", "GT6", "Glycosyltransferase Family 6" ], [ "Q70D54-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "A5PF10-1", "protein_xref_cazy", "GH33", "Glycoside Hydrolase Family 33" ], [ "Q8MI02-1", "protein_xref_cazy", "GH56", "Glycoside Hydrolase Family 56" ], [ "P79282-1", "protein_xref_cazy", "GT23", "Glycosyltransferase Family 23" ], [ "P80387-1", "protein_xref_cazy", "CBM48", "Carbohydrate-Binding Module Family 48" ], [ "D5K891-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "F1S3E0-1", "protein_xref_cazy", "GT7", "Glycosyltransferase Family 7" ], [ "P12069-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "P12068-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "P12067-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "Q02745-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q29411-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "A5GFZ5-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ] ] }, "readme": "Name\n - Pig UniProtKB Xref CAZy\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2024-02-28T18:51:30\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Pig UniprotKB Xref CAZy contains pig [taxid:9823] UniProtKB canonical accessions cross-referenced to CAZy database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - CAZy is a database of Carbohydrate-Active enZYmes (CAZymes). The database contains a classification and associated information about enzymes involved in the synthesis, metabolism, and recognition of complex carbohydrates.\n\nDescription Domain\n Keywords\n - carbohydrate family\n - CAZy\n - glycosyltransferase\n - glycohydrolase\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CAZy database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_xref_cazy.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_cazy.csv\n Name: pig_protein_xref_cazy.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_cazy.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"36\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"27\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"27\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_xref_cazy.csv" }