{ "bcoid": "GLY_000941", "title": "Pig UniProtKB Xref CDD", "description": "The Pig UniProtKB Xref CDD contains human [taxid:1758] UniProtKB canonical accessions cross-referenced ...", "filename": "pig_protein_xref_cdd.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "Cdd cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A4X1U3C8-1...", "protein_xref..." ], [ "A0A287BSN5-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "A0A4X1U3C8-1", "protein_xref_cdd", "cd02621", "Peptidase_C1A_CathepsinC" ], [ "A0A287BSN5-1", "protein_xref_cdd", "cd07936", "SCAN" ], [ "F1RV90-1", "protein_xref_cdd", "cd07830", "STKc_MAK_like" ], [ "F1S708-1", "protein_xref_cdd", "cd00087", "FReD" ], [ "F1S708-1", "protein_xref_cdd", "cd00063", "FN3" ], [ "F1S708-1", "protein_xref_cdd", "cd00055", "EGF_Lam" ], [ "A0A8W4FMS3-1", "protein_xref_cdd", "cd12064", "SH3_GRAF" ], [ "A0A8W4FMS3-1", "protein_xref_cdd", "cd01249", "BAR-PH_GRAF_family" ], [ "A0A8W4FMS3-1", "protein_xref_cdd", "cd04374", "RhoGAP_Graf" ], [ "A0A287AGD8-1", "protein_xref_cdd", "cd00055", "EGF_Lam" ], [ "A0A287AGD8-1", "protein_xref_cdd", "cd00054", "EGF_CA" ], [ "A0A287BN22-1", "protein_xref_cdd", "cd18385", "BTB_POZ_BTBD10_GMRP1" ], [ "A0A286ZXT3-1", "protein_xref_cdd", "cd05167", "PI4Kc_III_alpha" ], [ "A0A4X1U326-1", "protein_xref_cdd", "cd04107", "Rab32_Rab38" ], [ "A0A5G2Q7W2-1", "protein_xref_cdd", "cd10297", "GST_C_CLIC5" ], [ "A0A5G2Q7W2-1", "protein_xref_cdd", "cd03061", "GST_N_CLIC" ], [ "A0A287AZX1-1", "protein_xref_cdd", "cd00190", "Tryp_SPc" ], [ "A0A287BAF3-1", "protein_xref_cdd", "cd03108", "AdSS" ], [ "A0A287AM68-1", "protein_xref_cdd", "cd14041", "STKc_TLK2" ], [ "F1S1B2-1", "protein_xref_cdd", "cd05879", "IgV_P0" ], [ "F1SU62-1", "protein_xref_cdd", "cd07765", "KRAB_A-box" ], [ "A0A286ZTQ8-1", "protein_xref_cdd", "cd14686", "bZIP" ], [ "I3LT93-1", "protein_xref_cdd", "cd06578", "HemD" ], [ "A0A5G2RE27-1", "protein_xref_cdd", "cd15819", "SPRY_PRY_BTN1_2" ], [ "A0A5G2QDB9-1", "protein_xref_cdd", "cd03390", "PAP2_containing_1_like" ], [ "A0A287B9Q3-1", "protein_xref_cdd", "cd04970", "Ig6_Contactin" ], [ "A0A287B9Q3-1", "protein_xref_cdd", "cd05849", "IgI_1_Contactin-1" ], [ "A0A287B9Q3-1", "protein_xref_cdd", "cd05851", "IgI_3_Contactin-1" ], [ "A0A287B9Q3-1", "protein_xref_cdd", "cd05727", "Ig2_Contactin-2-like" ], [ "I3LQS2-1", "protein_xref_cdd", "cd02587", "HAD_5-3dNT" ], [ "K7GSF4-1", "protein_xref_cdd", "cd22512", "KH_I_FMR1_rpt3" ], [ "K7GSF4-1", "protein_xref_cdd", "cd20471", "Tudor_Agenet_FMR1_rpt1" ], [ "K7GSF4-1", "protein_xref_cdd", "cd20474", "Tudor_Agenet_FMR1_rpt2" ], [ "K7GSF4-1", "protein_xref_cdd", "cd22506", "KH_I_FMR1_rpt1" ], [ "K7GSF4-1", "protein_xref_cdd", "cd22509", "KH_I_FMR1_rpt2" ], [ "A0A287A1S5-1", "protein_xref_cdd", "cd00160", "RhoGEF" ], [ "A0A287A1S5-1", "protein_xref_cdd", "cd15794", "PH_ARHGEF18" ], [ "A0A5G2RE32-1", "protein_xref_cdd", "cd00057", "FA58C" ], [ "A0A5G2RE32-1", "protein_xref_cdd", "cd00041", "CUB" ], [ "A0A5G2RE32-1", "protein_xref_cdd", "cd06263", "MAM" ], [ "A0A5G2RCT6-1", "protein_xref_cdd", "cd06457", "M3A_MIP" ], [ "F1RTM6-1", "protein_xref_cdd", "cd07073", "NR_LBD_AR" ], [ "F1RTM6-1", "protein_xref_cdd", "cd07173", "NR_DBD_AR" ], [ "A0A287A1X6-1", "protein_xref_cdd", "cd06936", "NR_LBD_Fxr" ], [ "A0A287A1X6-1", "protein_xref_cdd", "cd06962", "NR_DBD_FXR" ], [ "A0A5G2QM40-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "C0JPM4-1", "protein_xref_cdd", "cd03585", "NTR_TIMP" ], [ "A0A286ZR27-1", "protein_xref_cdd", "cd03486", "MutL_Trans_MLH3" ], [ "A0A286ZR27-1", "protein_xref_cdd", "cd16926", "HATPase_MutL-MLH-PMS-like" ], [ "O97676-1", "protein_xref_cdd", "cd18921", "bHLHzip_SREBP1" ], [ "P01232-1", "protein_xref_cdd", "cd00069", "GHB_like" ], [ "P01238-1", "protein_xref_cdd", "cd10288", "prolactin_like" ], [ "A0A286ZVX0-1", "protein_xref_cdd", "cd13785", "CARD_BinCARD_like" ], [ "F1SUD5-1", "protein_xref_cdd", "cd15554", "PHD_PHF2_like" ], [ "I3LHP5-1", "protein_xref_cdd", "cd09462", "LIM1_LIMK1" ], [ "I3LHP5-1", "protein_xref_cdd", "cd14221", "STKc_LIMK1" ], [ "I3LHP5-1", "protein_xref_cdd", "cd00992", "PDZ_signaling" ], [ "A0A4X1V8S0-1", "protein_xref_cdd", "cd01176", "IPT_RBP-Jkappa" ], [ "A0A8W4FF87-1", "protein_xref_cdd", "cd01463", "vWA_VGCC_like" ], [ "K7GQH5-1", "protein_xref_cdd", "cd08783", "Death_MALT1" ], [ "K7GQH5-1", "protein_xref_cdd", "cd00096", "Ig" ], [ "F1SKE6-1", "protein_xref_cdd", "cd12223", "RRM_SR140" ], [ "F1SKE6-1", "protein_xref_cdd", "cd21370", "cwf21_SR140" ], [ "F1SKE7-1", "protein_xref_cdd", "cd03576", "NTR_PCOLCE" ], [ "F1SKE7-1", "protein_xref_cdd", "cd00041", "CUB" ], [ "Q8MJS1-1", "protein_xref_cdd", "cd00063", "FN3" ], [ "C9K505-1", "protein_xref_cdd", "cd07841", "STKc_CDK7" ], [ "A0A4X1UGW7-1", "protein_xref_cdd", "cd09929", "SH2_BLNK_SLP-76" ], [ "A0A8D1DGD3-1", "protein_xref_cdd", "cd15784", "PH_RUTBC" ], [ "A0A8D1DGD3-1", "protein_xref_cdd", "cd17704", "RUN_SGSM2" ], [ "P81693-1", "protein_xref_cdd", "cd16343", "LMWPTP" ], [ "A0A8W4FDR0-1", "protein_xref_cdd", "cd09563", "SAM_liprin-beta1_2_repeat1" ], [ "A0A8W4FDR0-1", "protein_xref_cdd", "cd09566", "SAM_liprin-beta1_2_repeat2" ], [ "A0A8W4FDR0-1", "protein_xref_cdd", "cd09569", "SAM_liprin-beta1_2_repeat3" ], [ "A0A287AQF5-1", "protein_xref_cdd", "cd20850", "C1_DGKiota_rpt1" ], [ "A0A287AQF5-1", "protein_xref_cdd", "cd20896", "C1_DGKiota_rpt2" ], [ "A0A287AUY1-1", "protein_xref_cdd", "cd11972", "SH3_Abi2" ], [ "A0A287BF76-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "I3LGF0-1", "protein_xref_cdd", "cd02073", "P-type_ATPase_APLT_Dnf-like" ], [ "A0A287BF73-1", "protein_xref_cdd", "cd18398", "BTB_POZ_KCTD16" ], [ "A0A287BF73-1", "protein_xref_cdd", "cd22219", "H1_KCTD16" ], [ "A0A287BF71-1", "protein_xref_cdd", "cd12026", "SH3_ZO-1" ], [ "A0A287BF71-1", "protein_xref_cdd", "cd00992", "PDZ_signaling" ], [ "B1NI70-1", "protein_xref_cdd", "cd01428", "ADK" ] ] }, "readme": "Name\n - Pig UniProtKB Xref CDD\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-03-15T12:09:02.680538\n\nModified on\n - 2024-02-28T17:41:06\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Pig UniProtKB Xref CDD contains human [taxid:1758] UniProtKB canonical accessions cross-referenced to CDD database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The Conserved Domain Database is a database of well-annotated multiple sequence alignment models and derived database search models, for ancient domains and full-length proteins.\n\nDescription Domain\n Keywords\n - protein domains\n - CDD\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CDD database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_xref_cdd.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_cdd.csv\n Name: pig_protein_xref_cdd.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_cdd.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"11188\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"7553\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"7549\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_xref_cdd.csv" }