{ "bcoid": "GLY_000939", "title": "Pig Proteoform O-GlcNAc Glycosylation Citations (MCW)", "description": "The Pig O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in ...", "filename": "pig_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Proteoform" ], "tag": [ "Protein Citations O-GlcNAc (MCW)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A286ZZJ6-1...", "Robust effec..." ], [ "A0A287AHK1-1...", "Proteomic An..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "A0A286ZZJ6-1", "Robust effect of metabolic syndrome on major metabolic pathways in the myocardium.", "PloS one", "2019", "Karimi Maryam, Pavlov Vasile I, Ziegler Olivia, Sriram Nivedita, Yoon Se-Young, Agbortoko Vahid, Alexandrova Stoiana, Asara John, Sellke Frank W, Sturek Michael, Feng Jun, Alexandrov Boian S, Usheva Anny", "protein_xref_pubmed", "31790488", "protein_xref_oglcnac_db", "A0A286ZZJ6", "G49108TO" ], [ "A0A287AHK1-1", "Proteomic Analysis of Pig (Sus scrofa) Olfactory Soluble Proteome Reveals O-Linked-N-Acetylglucosaminylation of Secreted Odorant-Binding Proteins.", "Frontiers in endocrinology", "2014", "Nagnan-Le Meillour Patricia, Vercoutter-Edouart Anne-Sophie, Hilliou Fr\u00e9d\u00e9rique, Le Danvic Chrystelle, L\u00e9vy Fr\u00e9d\u00e9ric", "protein_xref_pubmed", "25538681", "protein_xref_oglcnac_db", "A0A287AHK1", "G49108TO" ], [ "C0HL13-1", "O-GlcNAcylation reduces proximal tubule protein reabsorption and promotes proteinuria in spontaneously hypertensive rats.", "The Journal of biological chemistry", "2018 Aug 17", "Silva-Aguiar RP, Bezerra NCF, Lucena MC, Sirtoli GM, Sudo RT, Zapata-Sudo G, Takiya CM, Pinheiro AAS, Dias WB, Caruso-Neves C", "protein_xref_pubmed", "29954945", "protein_xref_oglcnac_db", "C0HL13", "G49108TO" ], [ "I3LHM3-1", "Modification of topoisomerase I activity by glucose and by O-GlcNAcylation of the enzyme protein.", "Glycobiology", "2007 Dec", "Noach N, Segev Y, Levi I, Segal S, Priel E", "protein_xref_pubmed", "17932134", "protein_xref_oglcnac_db", "I3LHM3", "G49108TO" ], [ "K7GLV2-1", "High glucose reduces megalin-mediated albumin endocytosis in renal proximal tubule cells through protein kinase B O-GlcNAcylation.", "The Journal of biological chemistry", "2018-07-20", "Peruchetti Diogo de Barros, Silva-Aguiar Rodrigo Pacheco, Siqueira Gabriela Marques, Dias Wagner Barbosa, Caruso-Neves Celso", "protein_xref_pubmed", "29871929", "protein_xref_oglcnac_db", "K7GLV2", "G49108TO" ], [ "K9IVK7-1", "Robust effect of metabolic syndrome on major metabolic pathways in the myocardium.", "PloS one", "2019", "Karimi Maryam, Pavlov Vasile I, Ziegler Olivia, Sriram Nivedita, Yoon Se-Young, Agbortoko Vahid, Alexandrova Stoiana, Asara John, Sellke Frank W, Sturek Michael, Feng Jun, Alexandrov Boian S, Usheva Anny", "protein_xref_pubmed", "31790488", "protein_xref_oglcnac_db", "K9IVK7", "G49108TO" ], [ "P00761-1", "O-GlcNAc modification regulates MTA1 transcriptional activity during breast cancer cell genotoxic adaptation.", "Biochimica et biophysica acta. General subjects", "2021 Aug", "Xie X, Wu Q, Zhang K, Liu Y, Zhang N, Chen Q, Wang L, Li W, Zhang J, Liu Y", "protein_xref_pubmed", "34019948", "protein_xref_oglcnac_db", "P00761", "G49108TO" ], [ "P00761-1", "Extracellular arginine availability modulates eIF2\u03b1 O-GlcNAcylation and heme oxygenase 1 translation for cellular homeostasis.", "Journal of biomedical science", "2023-05-22", "Hung Yu-Wen, Ouyang Ching, Ping Xiaoli, Qi Yue, Wang Yi-Chang, Kung Hsing-Jien, Ann David K", "protein_xref_pubmed", "37217939", "protein_xref_oglcnac_db", "P00761", "G49108TO" ], [ "P53715-1", "Natural ligands of porcine olfactory binding proteins.", "Journal of chemical ecology", "2009-07", "Le Danvic Chrystelle, Guiraudie-Capraz Gaelle, Abderrahmani Djamel, Zanetta Jean-Pierre, Nagnan-Le Meillour Patricia", "protein_xref_pubmed", "19462206", "protein_xref_oglcnac_db", "P53715", "G49108TO" ], [ "P81245-1", "Proteomic Analysis of Pig (Sus scrofa) Olfactory Soluble Proteome Reveals O-Linked-N-Acetylglucosaminylation of Secreted Odorant-Binding Proteins.", "Frontiers in endocrinology", "2014", "Nagnan-Le Meillour Patricia, Vercoutter-Edouart Anne-Sophie, Hilliou Fr\u00e9d\u00e9rique, Le Danvic Chrystelle, L\u00e9vy Fr\u00e9d\u00e9ric", "protein_xref_pubmed", "25538681", "protein_xref_oglcnac_db", "P81245", "G49108TO" ], [ "P81245-1", "Binding Specificity of Native Odorant-Binding Protein Isoforms Is Driven by Phosphorylation and O-N-Acetylglucosaminylation in the Pig Sus scrofa.", "Frontiers in endocrinology", "2018", "Nagnan-Le Meillour Patricia, Joly Alexandre, Le Danvic Chrystelle, Marie Arul, Zirah S\u00e9verine, Cornard Jean-Paul", "protein_xref_pubmed", "30740091", "protein_xref_oglcnac_db", "P81245", "G49108TO" ], [ "Q95250-1", "O-GlcNAcylation mediates the control of cytosolic phosphoenolpyruvate carboxykinase activity via Pgc1alpha.", "PloS one", "2017", "Latorre P, Varona L, Burgos C, Carrodeguas JA, Lopez-Buesa P", "protein_xref_pubmed", "28644880", "protein_xref_oglcnac_db", "Q95250", "G49108TO" ] ] }, "readme": "Name\n - Pig Proteoform O-GlcNAc Glycosylation Citations (MCW)\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu], Rex R. Berendt [rberendt@mcw.edu], Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n - \n\nUsability Domain\n - The Pig O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in the dataset Pig O-GlcNAc Glycosylation Sites (MCW) httpss://data.glygen.org/GLY_000935, contributed by Stephanie Olivier's group.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n - Publications\n - Citations\n - PubMed\n - MCW\n - Glycosylation\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: pig_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Output Subdomain\n Name: pig_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n Name: pig_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"10\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"10\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"7\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"10\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"10\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"10\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"10\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv" }