{ "bcoid": "GLY_000937", "title": "Pig Protein Recommended Names (UniProtKB)", "description": "The Pig Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for human ...", "filename": "pig_protein_recnames.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "Protein Recommended Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A4X1U326-1...", "Ras-related ..." ], [ "A0A8W4FCZ2-1...", "Olfactory re..." ] ], "headers": [ "uniprotkb_ca...", "recommended_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "recommended_name_short" }, { "type": "string", "label": "ec_name" } ], [ "A0A4X1U326-1", "Ras-related protein Rab", "", "" ], [ "A0A8W4FCZ2-1", "Olfactory receptor", "", "" ], [ "I3LT93-1", "uroporphyrinogen-III synthase", "", "4.2.1.75" ], [ "F1RTM6-1", "Androgen receptor", "", "" ], [ "A0A5G2QM40-1", "Homeobox protein cut-like", "", "" ], [ "C0JPM4-1", "Metalloproteinase inhibitor 2", "", "" ], [ "O97676-1", "Sterol regulatory element-binding protein 1", "SREBP-1", "" ], [ "P01232-1", "Lutropin subunit beta", "Lutropin beta chain", "" ], [ "A0A5G2QG63-1", "Heparanase", "", "3.2.1.166" ], [ "P01238-1", "Prolactin", "PRL", "" ], [ "F1SUD9-1", "Inositol-pentakisphosphate 2-kinase", "", "2.7.1.158" ], [ "I3LHP2-1", "palmitoyl-protein hydrolase", "", "3.1.2.22" ], [ "I3LHP0-1", "2-(3-amino-3-carboxypropyl)histidine synthase subunit 1", "", "2.5.1.108" ], [ "I3LHP5-1", "LIM domain kinase 1", "", "2.7.11.1" ], [ "A0A286ZNE1-1", "Olfactory receptor", "", "" ], [ "Q8MJS1-1", "Interleukin-12 receptor subunit beta-2", "IL-12 receptor subunit beta-2", "" ], [ "Q8MJS1-1", "Interleukin-12 receptor subunit beta-2", "IL-12R subunit beta-2", "" ], [ "Q8MJS1-1", "Interleukin-12 receptor subunit beta-2", "IL-12R-beta-2", "" ], [ "Q8MJS1-1", "Interleukin-12 receptor subunit beta-2", "IL-12RB2", "" ], [ "A0A4X1VBA4-1", "N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D", "", "3.1.4.54" ], [ "A0A4X1W748-1", "Small vasohibin-binding protein", "", "" ], [ "P81693-1", "Low molecular weight phosphotyrosine protein phosphatase", "LMW-PTP", "3.1.3.48" ], [ "P81693-1", "Low molecular weight phosphotyrosine protein phosphatase", "LMW-PTPase", "3.1.3.48" ], [ "I3LRZ7-1", "Cytochrome c oxidase assembly factor 7", "", "" ], [ "A0A287BF76-1", "Homeobox protein", "", "" ], [ "I3LGF0-1", "Phospholipid-transporting ATPase", "", "7.6.2.1" ], [ "B1NI70-1", "Adenylate kinase 4, mitochondrial", "AK 4", "2.7.4.6" ], [ "B1NI70-1", "Adenylate kinase 4, mitochondrial", "AK 4", "2.7.4.10" ], [ "F1SBQ3-1", "Monocarboxylate transporter 1", "", "" ], [ "A0A8W4FL27-1", "Large ribosomal subunit protein eL20", "", "" ], [ "A0A8W4FL26-1", "Olfactory receptor", "", "" ], [ "K7GPD4-1", "Integrin beta", "", "" ], [ "A0A8D0S8P5-1", "3beta-hydroxysteroid 3-dehydrogenase", "", "1.1.1.270" ], [ "A0A4X1W9P4-1", "non-specific serine/threonine protein kinase", "", "2.7.11.1" ], [ "A0A4X1SQM6-1", "U6 snRNA-associated Sm-like protein LSm5", "", "" ], [ "A0A480JAZ9-1", "Elongation of very long chain fatty acids protein 7", "", "2.3.1.199" ], [ "I3LS26-1", "Prosaposin", "", "" ], [ "I3LS25-1", "Small EDRK-rich factor-like N-terminal domain-containing protein", "", "" ], [ "A0A480NH74-1", "Mitogen-activated protein kinase", "", "2.7.11.24" ], [ "A0A5G2QTF7-1", "KRAB domain-containing protein", "", "" ], [ "I3LU89-1", "Charged multivesicular body protein 1a", "", "" ], [ "I3LU85-1", "Carboxylic ester hydrolase", "", "3.1.1.-" ], [ "A0A4X1SFI9-1", "Mitotic checkpoint protein BUB3", "", "" ], [ "A0A8W4FD45-1", "Galectin", "", "" ], [ "A0A8W4FD42-1", "Olfactory receptor", "", "" ], [ "A0A287A664-1", "Diacylglycerol kinase", "DAG kinase", "2.7.1.107" ], [ "A0A5G2QAB8-1", "L1 transposable element RRM domain-containing protein", "", "" ], [ "A0A286ZL50-1", "Olfactory receptor", "", "" ], [ "A0A286ZL59-1", "Diphthine--ammonia ligase", "", "6.3.1.14" ], [ "A0A4X1VD60-1", "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B", "", "" ], [ "A0A480Z1K0-1", "Solute carrier family 35 member F5", "", "" ], [ "Q2HYU1-1", "Creatine kinase S-type, mitochondrial", "", "2.7.3.2" ], [ "Q2HYU2-1", "ATP-dependent 6-phosphofructokinase, muscle type", "ATP-PFK", "2.7.1.11" ], [ "Q2HYU2-1", "ATP-dependent 6-phosphofructokinase, muscle type", "PFK-M", "2.7.1.11" ], [ "A0A8W4F8J6-1", "Endonuclease/exonuclease/phosphatase domain-containing protein", "", "" ], [ "A0A8W4F8J3-1", "Inositol oxygenase", "", "1.13.99.1" ], [ "A0A287AUE3-1", "RRM domain-containing protein", "", "" ], [ "A0A4X1UGJ1-1", "ORM1-like protein", "", "" ], [ "A0A4X1W654-1", "Transmembrane protein 168", "", "" ], [ "F1RFE3-1", "Leucine carboxyl methyltransferase 1", "", "2.1.1.233" ], [ "F1S0J2-1", "Sushi domain-containing protein", "", "" ], [ "F1S0J1-1", "Sushi domain-containing protein", "", "" ], [ "A0A287B3T2-1", "Ferrochelatase", "", "4.98.1.1" ], [ "A0A4X1SK65-1", "Small ribosomal subunit protein eS1", "", "" ], [ "A0A8D0MXN0-1", "DUF1725 domain-containing protein", "", "" ], [ "A0A287BQ22-1", "Methylated-DNA--protein-cysteine methyltransferase", "", "2.1.1.63" ], [ "A0A287BQ26-1", "Olfactory receptor", "", "" ], [ "A0A287BQ24-1", "DUF4592 domain-containing protein", "", "" ], [ "A0A287AD77-1", "rRNA biogenesis protein RRP36", "", "" ], [ "Q9MYN5-1", "Cyclin-dependent kinase inhibitor 3", "", "3.1.3.48" ], [ "Q9MYN5-1", "Cyclin-dependent kinase inhibitor 3", "", "3.1.3.16" ], [ "A0A5G2QV47-1", "Aprataxin", "", "3.6.1.71" ], [ "A0A5G2QV47-1", "Aprataxin", "", "3.6.1.72" ], [ "A0A8W4FPQ3-1", "Envelope glycoprotein", "", "" ], [ "A0A8W4FFZ9-1", "Reverse transcriptase domain-containing protein", "", "" ], [ "A0A8W4FFZ5-1", "DUF1725 domain-containing protein", "", "" ], [ "A0A8W4F817-1", "sn-1-specific diacylglycerol lipase", "", "3.1.1.116" ], [ "A0A4X1TFA2-1", "Transcription and mRNA export factor ENY2", "", "" ], [ "A0A287A7A4-1", "Interleukin-2 receptor subunit alpha", "", "" ], [ "I3LMQ0-1", "Platelet glycoprotein 4", "", "" ], [ "I3LMQ4-1", "START domain-containing protein", "", "" ], [ "A0A8W4FLL3-1", "MAGE domain-containing protein", "", "" ], [ "A0A287AHC5-1", "Guanine nucleotide-binding protein subunit gamma", "", "" ], [ "A0A287AEA8-1", "Cytoplasmic tRNA 2-thiolation protein 2", "", "" ] ] }, "readme": "Name\n - Pig Protein Recommended Names (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-01-23T17:21:05.956673\n\nModified on\n - 2024-02-28T16:07:25\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Pig Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for human [taxid:1758] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein recommended name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_recnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_recnames.csv\n Name: pig_protein_recnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_recnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"11598\"\n Name: \"recommended_name_full\"\n Description: \"Recommended full name of the protein in the UniProtKB database\"\n Unique Values: \"6011\"\n Name: \"recommended_name_short\"\n Description: \"Recommended short name of the protein in UniProtKB database\"\n Unique Values: \"840\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"1043\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_recnames.csv" }