{ "bcoid": "GLY_000932", "title": "Pig NCBI Protein Linkouts", "description": "The Pig NCBI Protein Linkouts contains human [taxid:1758] NCBI RefSeq accessions with their corresponding ...", "filename": "pig_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tag": [ "NCBI Gene Linkouts" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", "XP_003480781", "https://glygen.org/protein/A0A287BN22", "", "", "", "" ], [ "10227", "Protein", "XP_003482633", "https://glygen.org/protein/A0A4X1U326", "", "", "", "" ], [ "10227", "Protein", "XP_005671610", "https://glygen.org/protein/I3LT93", "", "", "", "" ], [ "10227", "Protein", "XP_003131260", "https://glygen.org/protein/I3LQS2", "", "", "", "" ], [ "10227", "Protein", "XP_003130932", "https://glygen.org/protein/F1RTM0", "", "", "", "" ], [ "10227", "Protein", "XP_013841681", "https://glygen.org/protein/F1RTM6", "", "", "", "" ], [ "10227", "Protein", "NP_001139457", "https://glygen.org/protein/C0JPM4", "", "", "", "" ], [ "10227", "Protein", "NP_999322", "https://glygen.org/protein/O97676", "", "", "", "" ], [ "10227", "Protein", "NP_999245", "https://glygen.org/protein/P01232", "", "", "", "" ], [ "10227", "Protein", "NP_999091", "https://glygen.org/protein/P01238", "", "", "", "" ], [ "10227", "Protein", "XP_003356251", "https://glygen.org/protein/I3LHP2", "", "", "", "" ], [ "10227", "Protein", "XP_013837562", "https://glygen.org/protein/F1SKE6", "", "", "", "" ], [ "10227", "Protein", "XP_005669974", "https://glygen.org/protein/F1SKE7", "", "", "", "" ], [ "10227", "Protein", "NP_999262", "https://glygen.org/protein/Q8MJS1", "", "", "", "" ], [ "10227", "Protein", "XP_003130288", "https://glygen.org/protein/A0A4X1VBA4", "", "", "", "" ], [ "10227", "Protein", "XP_001928268", "https://glygen.org/protein/A0A4X1UGW7", "", "", "", "" ], [ "10227", "Protein", "XP_003481358", "https://glygen.org/protein/P81693", "", "", "", "" ], [ "10227", "Protein", "NP_001152784", "https://glygen.org/protein/C1JEX7", "", "", "", "" ], [ "10227", "Protein", "XP_005656211", "https://glygen.org/protein/B1NI70", "", "", "", "" ], [ "10227", "Protein", "XP_003354012", "https://glygen.org/protein/A0A287BF79", "", "", "", "" ], [ "10227", "Protein", "XP_013843597", "https://glygen.org/protein/F1SBQ0", "", "", "", "" ], [ "10227", "Protein", "XP_013849575", "https://glygen.org/protein/A0A5G2QU61", "", "", "", "" ], [ "10227", "Protein", "XP_005673329", "https://glygen.org/protein/A0A4X1SQM6", "", "", "", "" ], [ "10227", "Protein", "XP_013838151", "https://glygen.org/protein/A0A480JAZ9", "", "", "", "" ], [ "10227", "Protein", "XP_013848516", "https://glygen.org/protein/I3LS25", "", "", "", "" ], [ "10227", "Protein", "XP_003122547", "https://glygen.org/protein/F1RU42", "", "", "", "" ], [ "10227", "Protein", "NP_001230289", "https://glygen.org/protein/I3LU89", "", "", "", "" ], [ "10227", "Protein", "XP_005671576", "https://glygen.org/protein/A0A4X1SFI9", "", "", "", "" ], [ "10227", "Protein", "XP_005669983", "https://glygen.org/protein/A0A286ZL52", "", "", "", "" ], [ "10227", "Protein", "XP_003131820", "https://glygen.org/protein/A0A286ZL51", "", "", "", "" ], [ "10227", "Protein", "XP_003123371", "https://glygen.org/protein/F1SEX4", "", "", "", "" ], [ "10227", "Protein", "XP_003123365", "https://glygen.org/protein/F1SEX6", "", "", "", "" ], [ "10227", "Protein", "XP_005670497", "https://glygen.org/protein/A0A4X1VD60", "", "", "", "" ], [ "10227", "Protein", "NP_001230621", "https://glygen.org/protein/A0A480Z1K0", "", "", "", "" ], [ "10227", "Protein", "NP_001038016", "https://glygen.org/protein/Q2HYU1", "", "", "", "" ], [ "10227", "Protein", "NP_001038015", "https://glygen.org/protein/Q2HYU2", "", "", "", "" ], [ "10227", "Protein", "XP_005659254", "https://glygen.org/protein/A0A480QFR5", "", "", "", "" ], [ "10227", "Protein", "XP_003131546", "https://glygen.org/protein/A0A4X1UGJ1", "", "", "", "" ], [ "10227", "Protein", "XP_005665949", "https://glygen.org/protein/A0A287ATT0", "", "", "", "" ], [ "10227", "Protein", "XP_003134813", "https://glygen.org/protein/A0A4X1W654", "", "", "", "" ], [ "10227", "Protein", "XP_013850658", "https://glygen.org/protein/A0A287BH18", "", "", "", "" ], [ "10227", "Protein", "XP_003124581", "https://glygen.org/protein/F1RFE3", "", "", "", "" ], [ "10227", "Protein", "XP_003122615", "https://glygen.org/protein/F1RQT0", "", "", "", "" ], [ "10227", "Protein", "XP_005668252", "https://glygen.org/protein/F1RUQ7", "", "", "", "" ], [ "10227", "Protein", "XP_003127874", "https://glygen.org/protein/A0A480SN06", "", "", "", "" ], [ "10227", "Protein", "XP_005672850", "https://glygen.org/protein/F1S890", "", "", "", "" ], [ "10227", "Protein", "XP_003123283", "https://glygen.org/protein/A0A287BQ26", "", "", "", "" ], [ "10227", "Protein", "NP_999485", "https://glygen.org/protein/Q9MYN5", "", "", "", "" ], [ "10227", "Protein", "NP_001230382", "https://glygen.org/protein/A0A4X1TFA2", "", "", "", "" ], [ "10227", "Protein", "XP_003132179", "https://glygen.org/protein/A0A4X1THK7", "", "", "", "" ], [ "10227", "Protein", "XP_003130275", "https://glygen.org/protein/I3LMQ0", "", "", "", "" ], [ "10227", "Protein", "XP_013850232", "https://glygen.org/protein/I3LMQ5", "", "", "", "" ], [ "10227", "Protein", "XP_003354042", "https://glygen.org/protein/A0A287AHC5", "", "", "", "" ], [ "10227", "Protein", "XP_013850710", "https://glygen.org/protein/A0A287AHC2", "", "", "", "" ], [ "10227", "Protein", "XP_003129089", "https://glygen.org/protein/A0A287AEA2", "", "", "", "" ], [ "10227", "Protein", "XP_005652899", "https://glygen.org/protein/A0A5G2QSN2", "", "", "", "" ], [ "10227", "Protein", "XP_013837355", "https://glygen.org/protein/A0A287ASJ8", "", "", "", "" ], [ "10227", "Protein", "XP_003354820", "https://glygen.org/protein/F1SLF2", "", "", "", "" ], [ "10227", "Protein", "XP_003129962", "https://glygen.org/protein/F1SAJ5", "", "", "", "" ], [ "10227", "Protein", "XP_003135062", "https://glygen.org/protein/A0A286ZKL8", "", "", "", "" ], [ "10227", "Protein", "XP_013851985", "https://glygen.org/protein/A0A286ZKL4", "", "", "", "" ], [ "10227", "Protein", "XP_013839251", "https://glygen.org/protein/A0A286ZKL2", "", "", "", "" ], [ "10227", "Protein", "NP_999441", "https://glygen.org/protein/P00889", "", "", "", "" ], [ "10227", "Protein", "XP_005666789", "https://glygen.org/protein/F1RUN3", "", "", "", "" ], [ "10227", "Protein", "NP_999553", "https://glygen.org/protein/O46409", "", "", "", "" ], [ "10227", "Protein", "XP_003124646", "https://glygen.org/protein/A0A8W4FJN8", "", "", "", "" ], [ "10227", "Protein", "XP_005661294", "https://glygen.org/protein/A0A4X1V4U5", "", "", "", "" ], [ "10227", "Protein", "XP_001925699", "https://glygen.org/protein/F1RZL4", "", "", "", "" ], [ "10227", "Protein", "NP_999604", "https://glygen.org/protein/Q6RHW2", "", "", "", "" ], [ "10227", "Protein", "NP_999606", "https://glygen.org/protein/Q6RHW4", "", "", "", "" ], [ "10227", "Protein", "XP_003133495", "https://glygen.org/protein/A0A4X1VPB2", "", "", "", "" ], [ "10227", "Protein", "XP_005672413", "https://glygen.org/protein/A0A8D0TEH7", "", "", "", "" ], [ "10227", "Protein", "XP_003127560", "https://glygen.org/protein/A0A4X1W8S9", "", "", "", "" ], [ "10227", "Protein", "XP_005670298", "https://glygen.org/protein/A0A4X1SPN2", "", "", "", "" ], [ "10227", "Protein", "XP_003130451", "https://glygen.org/protein/A0A287A4L5", "", "", "", "" ], [ "10227", "Protein", "XP_001924854", "https://glygen.org/protein/A0A287BF75", "", "", "", "" ], [ "10227", "Protein", "XP_001928677", "https://glygen.org/protein/A0A286ZM51", "", "", "", "" ], [ "10227", "Protein", "XP_003129400", "https://glygen.org/protein/A0A8D0M0Q8", "", "", "", "" ], [ "10227", "Protein", "XP_003122195", "https://glygen.org/protein/A0A5G2QUE5", "", "", "", "" ], [ "10227", "Protein", "XP_003123037", "https://glygen.org/protein/A0A287BHT9", "", "", "", "" ], [ "10227", "Protein", "XP_013847041", "https://glygen.org/protein/A0A8D1LFT0", "", "", "", "" ], [ "10227", "Protein", "NP_999298", "https://glygen.org/protein/Q9BDJ5", "", "", "", "" ], [ "10227", "Protein", "XP_003131238", "https://glygen.org/protein/F1RVZ0", "", "", "", "" ], [ "10227", "Protein", "XP_003480685", "https://glygen.org/protein/F1RVZ5", "", "", "", "" ] ] }, "readme": "Name\n - Pig NCBI Protein Linkouts\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2020-03-20T15:53:27.297125\n\nModified on\n - 2024-02-28T15:49:00\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Pig NCBI Protein Linkouts contains human [taxid:1758] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n - The RefSeq accessions are The dataset is derived from NCBI RefSeq Release 96, September 9, 2019\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: pig_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_proteinnames_refseq.csv\n Name: pig_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_refseq.csv\n Output Subdomain\n Name: pig_protein_ncbi_linkouts.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_ncbi_linkouts.csv\n Name: pig_protein_ncbi_linkouts.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"ProviderId\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Database\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UID\"\n Description: \"NA\"\n Unique Values: \"7428\"\n Name: \"URL\"\n Description: \"NA\"\n Unique Values: \"7428\"\n Name: \"IconUrl\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UrlName\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"SubjectType\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Attribute\"\n Description: \"NA\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_ncbi_linkouts.csv" }