{
    "bcoid": "GLY_000931",
    "title": "Pig UniProtKB Xref PANTHER",
    "description": "The Pig UniProtKB Xref PANTHER contains Sus scrofa [taxid:9823] UniProtKB canonical accessions cross-referenced ...",
    "filename": "pig_protein_xref_panther.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "PANTHER cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A8W4F999-1...",
                "protein_xref..."
            ],
            [
                "A0A8W4F999-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "A0A8W4F999-1",
                "protein_xref_panther",
                "PTHR14947",
                "ZINC FINGER PROTEIN"
            ],
            [
                "A0A8W4F999-1",
                "protein_xref_panther",
                "PTHR14947:SF19",
                "ZINC FINGER PROTEIN 781"
            ],
            [
                "A0A4X1U3C8-1",
                "protein_xref_panther",
                "PTHR12411",
                "CYSTEINE PROTEASE FAMILY C1-RELATED"
            ],
            [
                "A0A4X1U3C8-1",
                "protein_xref_panther",
                "PTHR12411:SF942",
                "DIPEPTIDYL PEPTIDASE 1"
            ],
            [
                "A0A287BSN5-1",
                "protein_xref_panther",
                "PTHR45935:SF27",
                "SCAN BOX DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "A0A287BSN5-1",
                "protein_xref_panther",
                "PTHR45935",
                "PROTEIN ZBED8-RELATED"
            ],
            [
                "F1RV90-1",
                "protein_xref_panther",
                "PTHR24055",
                "MITOGEN-ACTIVATED PROTEIN KINASE"
            ],
            [
                "F1RV90-1",
                "protein_xref_panther",
                "PTHR24055:SF194",
                "SERINE/THREONINE-PROTEIN KINASE MAK"
            ],
            [
                "F1S708-1",
                "protein_xref_panther",
                "PTHR46708",
                "TENASCIN"
            ],
            [
                "F1S708-1",
                "protein_xref_panther",
                "PTHR46708:SF5",
                "TENASCIN N"
            ],
            [
                "A0A8W4FMS3-1",
                "protein_xref_panther",
                "PTHR12552:SF4",
                "RHO GTPASE-ACTIVATING PROTEIN 26"
            ],
            [
                "A0A8W4FMS3-1",
                "protein_xref_panther",
                "PTHR12552",
                "OLIGOPHRENIN 1"
            ],
            [
                "I3L6J1-1",
                "protein_xref_panther",
                "PTHR45799",
                "RETICULON-LIKE PROTEIN"
            ],
            [
                "I3L6J1-1",
                "protein_xref_panther",
                "PTHR45799:SF5",
                "RETICULON-1"
            ],
            [
                "A0A5G2RAB5-1",
                "protein_xref_panther",
                "PTHR42737",
                "GLUTATHIONE REDUCTASE"
            ],
            [
                "A0A5G2RAB5-1",
                "protein_xref_panther",
                "PTHR42737:SF3",
                "THIOREDOXIN-DISULFIDE REDUCTASE"
            ],
            [
                "A0A287AGD8-1",
                "protein_xref_panther",
                "PTHR10574",
                "NETRIN/LAMININ-RELATED"
            ],
            [
                "A0A287AGD8-1",
                "protein_xref_panther",
                "PTHR10574:SF28",
                "NETRIN-G1"
            ],
            [
                "A0A287BN22-1",
                "protein_xref_panther",
                "PTHR21637",
                "BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED"
            ],
            [
                "A0A287BN22-1",
                "protein_xref_panther",
                "PTHR21637:SF5",
                "BTB/POZ DOMAIN-CONTAINING PROTEIN 10"
            ],
            [
                "A0A287AE97-1",
                "protein_xref_panther",
                "PTHR48067",
                "GPI-ANCHOR TRANSAMIDASE"
            ],
            [
                "A0A287AE97-1",
                "protein_xref_panther",
                "PTHR48067:SF1",
                "GPI-ANCHOR TRANSAMIDASE"
            ],
            [
                "A0A287BN27-1",
                "protein_xref_panther",
                "PTHR22227",
                "UNCHARACTERIZED"
            ],
            [
                "A0A287BN27-1",
                "protein_xref_panther",
                "PTHR22227:SF1",
                "PABIR FAMILY MEMBER 2"
            ],
            [
                "A0A286ZXT3-1",
                "protein_xref_panther",
                "PTHR10048",
                "PHOSPHATIDYLINOSITOL KINASE"
            ],
            [
                "A0A286ZXT3-1",
                "protein_xref_panther",
                "PTHR10048:SF15",
                "PHOSPHATIDYLINOSITOL 4-KINASE ALPHA"
            ],
            [
                "A0A4X1VDU3-1",
                "protein_xref_panther",
                "PTHR13040",
                "AUTOPHAGY PROTEIN 5"
            ],
            [
                "A0A4X1VDU3-1",
                "protein_xref_panther",
                "PTHR13040:SF2",
                "AUTOPHAGY PROTEIN 5"
            ],
            [
                "F1RWM0-1",
                "protein_xref_panther",
                "PTHR13555",
                "C2H2 ZINC FINGER CGI-62-RELATED"
            ],
            [
                "F1RWM0-1",
                "protein_xref_panther",
                "PTHR13555:SF25",
                "ZINC FINGER C2HC DOMAIN-CONTAINING PROTEIN 1A"
            ],
            [
                "A0A8D0PQ51-1",
                "protein_xref_panther",
                "PTHR13674",
                "GROWTH AND TRANSFORMATION-DEPENDENT PROTEIN"
            ],
            [
                "A0A8D0PQ51-1",
                "protein_xref_panther",
                "PTHR13674:SF2",
                "PROTEIN FAM162A"
            ],
            [
                "I3L942-1",
                "protein_xref_panther",
                "PTHR12848",
                "REGULATORY-ASSOCIATED PROTEIN OF MTOR"
            ],
            [
                "I3L942-1",
                "protein_xref_panther",
                "PTHR12848:SF16",
                "REGULATORY-ASSOCIATED PROTEIN OF MTOR"
            ],
            [
                "A0A4X1U326-1",
                "protein_xref_panther",
                "PTHR47977",
                "RAS-RELATED PROTEIN RAB"
            ],
            [
                "A0A4X1U326-1",
                "protein_xref_panther",
                "PTHR47977:SF44",
                "RAS-RELATED PROTEIN RAB"
            ],
            [
                "A0A5G2Q7W2-1",
                "protein_xref_panther",
                "PTHR45476:SF4",
                "CHLORIDE INTRACELLULAR CHANNEL PROTEIN 5"
            ],
            [
                "A0A5G2Q7W2-1",
                "protein_xref_panther",
                "PTHR45476",
                "CHLORIDE INTRACELLULAR CHANNEL PROTEIN 6-RELATED"
            ],
            [
                "A0A287AZX1-1",
                "protein_xref_panther",
                "PTHR24271",
                "KALLIKREIN-RELATED"
            ],
            [
                "A0A287AZX1-1",
                "protein_xref_panther",
                "PTHR24271:SF68",
                "KALLIKREIN-11"
            ],
            [
                "A0A287BPN5-1",
                "protein_xref_panther",
                "PTHR12216",
                "UROCANATE HYDRATASE"
            ],
            [
                "A0A287BPN5-1",
                "protein_xref_panther",
                "PTHR12216:SF3",
                "UROCANATE HYDRATASE"
            ],
            [
                "A0A287BAF3-1",
                "protein_xref_panther",
                "PTHR11846",
                "ADENYLOSUCCINATE SYNTHETASE"
            ],
            [
                "A0A287BAF3-1",
                "protein_xref_panther",
                "PTHR11846:SF2",
                "ADENYLOSUCCINATE SYNTHETASE ISOZYME 1"
            ],
            [
                "F1SRD2-1",
                "protein_xref_panther",
                "PTHR12308",
                "ANOCTAMIN"
            ],
            [
                "F1SRD2-1",
                "protein_xref_panther",
                "PTHR12308:SF40",
                "ANOCTAMIN-10"
            ],
            [
                "A0A287AM68-1",
                "protein_xref_panther",
                "PTHR22974:SF20",
                "SERINE/THREONINE-PROTEIN KINASE TOUSLED-LIKE 2"
            ],
            [
                "A0A287AM68-1",
                "protein_xref_panther",
                "PTHR22974",
                "MIXED LINEAGE PROTEIN KINASE"
            ],
            [
                "F1S1B2-1",
                "protein_xref_panther",
                "PTHR13869",
                "MYELIN P0 RELATED"
            ],
            [
                "F1S1B2-1",
                "protein_xref_panther",
                "PTHR13869:SF7",
                "MYELIN PROTEIN P0"
            ],
            [
                "A0A8W4FCZ2-1",
                "protein_xref_panther",
                "PTHR26453",
                "OLFACTORY RECEPTOR"
            ],
            [
                "A0A8W4FCZ2-1",
                "protein_xref_panther",
                "PTHR26453:SF40",
                "OLFACTORY RECEPTOR"
            ],
            [
                "F1SU62-1",
                "protein_xref_panther",
                "PTHR23234",
                "ZNF44 PROTEIN"
            ],
            [
                "F1SU62-1",
                "protein_xref_panther",
                "PTHR23234:SF7",
                "GENE 14408-RELATED"
            ],
            [
                "A0A8D1TIK8-1",
                "protein_xref_panther",
                "PTHR13602",
                "UNCHARACTERIZED"
            ],
            [
                "A0A8D1TIK8-1",
                "protein_xref_panther",
                "PTHR13602:SF2",
                "UPF0488 PROTEIN C8ORF33"
            ],
            [
                "I3LFU4-1",
                "protein_xref_panther",
                "PTHR22367",
                "COILED-COIL DOMAIN-CONTAINING PROTEIN 14"
            ],
            [
                "I3LFU4-1",
                "protein_xref_panther",
                "PTHR22367:SF2",
                "COILED-COIL DOMAIN-CONTAINING PROTEIN 14"
            ],
            [
                "A0A286ZTQ8-1",
                "protein_xref_panther",
                "PTHR15726:SF6",
                "RAB11 FAMILY-INTERACTING PROTEIN 3"
            ],
            [
                "A0A286ZTQ8-1",
                "protein_xref_panther",
                "PTHR15726",
                "RAB11-FAMILY INTERACTING PROTEIN"
            ],
            [
                "I3LT93-1",
                "protein_xref_panther",
                "PTHR12390",
                "UROPORPHYRINOGEN III SYNTHASE"
            ],
            [
                "I3LT93-1",
                "protein_xref_panther",
                "PTHR12390:SF0",
                "UROPORPHYRINOGEN-III SYNTHASE"
            ],
            [
                "I3LFU3-1",
                "protein_xref_panther",
                "PTHR22605",
                "UNCHARACTERIZED"
            ],
            [
                "I3LFU3-1",
                "protein_xref_panther",
                "PTHR22605:SF16",
                "E3 UBIQUITIN-PROTEIN LIGASE RNF213"
            ],
            [
                "A0A5G2RE27-1",
                "protein_xref_panther",
                "PTHR24103",
                "E3 UBIQUITIN-PROTEIN LIGASE TRIM"
            ],
            [
                "A0A5G2RE27-1",
                "protein_xref_panther",
                "PTHR24103:SF393",
                "E3 UBIQUITIN-PROTEIN LIGASE TRIM58"
            ],
            [
                "A0A5G2QDB9-1",
                "protein_xref_panther",
                "PTHR10165:SF87",
                "PHOSPHOLIPID PHOSPHATASE 5"
            ],
            [
                "A0A5G2QDB9-1",
                "protein_xref_panther",
                "PTHR10165",
                "LIPID PHOSPHATE PHOSPHATASE"
            ],
            [
                "A0A287B9Q3-1",
                "protein_xref_panther",
                "PTHR44170:SF10",
                "CONTACTIN-1"
            ],
            [
                "A0A287B9Q3-1",
                "protein_xref_panther",
                "PTHR44170",
                "PROTEIN SIDEKICK"
            ],
            [
                "F1SDN3-1",
                "protein_xref_panther",
                "PTHR21625",
                "NYD-SP28 PROTEIN"
            ],
            [
                "F1SDN3-1",
                "protein_xref_panther",
                "PTHR21625:SF1",
                "DYNEIN REGULATORY COMPLEX PROTEIN 1"
            ],
            [
                "I3LQS2-1",
                "protein_xref_panther",
                "PTHR16504",
                "5'(3')-DEOXYRIBONUCLEOTIDASE"
            ],
            [
                "I3LQS2-1",
                "protein_xref_panther",
                "PTHR16504:SF5",
                "5'(3')-DEOXYRIBONUCLEOTIDASE, CYTOSOLIC TYPE"
            ],
            [
                "A0A5G2QFB4-1",
                "protein_xref_panther",
                "PTHR43107:SF4",
                "BILE ACYL-COA SYNTHETASE"
            ],
            [
                "A0A5G2QFB4-1",
                "protein_xref_panther",
                "PTHR43107",
                "LONG-CHAIN FATTY ACID TRANSPORT PROTEIN"
            ],
            [
                "K7GSF4-1",
                "protein_xref_panther",
                "PTHR10603",
                "FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN"
            ],
            [
                "K7GSF4-1",
                "protein_xref_panther",
                "PTHR10603:SF4",
                "SYNAPTIC FUNCTIONAL REGULATOR FMR1"
            ],
            [
                "A0A480LBW8-1",
                "protein_xref_panther",
                "PTHR24173:SF74",
                "ANKYRIN REPEAT DOMAIN 16"
            ],
            [
                "A0A480LBW8-1",
                "protein_xref_panther",
                "PTHR24173",
                "ANKYRIN REPEAT CONTAINING"
            ],
            [
                "F1S414-1",
                "protein_xref_panther",
                "PTHR45662",
                "PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1"
            ],
            [
                "F1S414-1",
                "protein_xref_panther",
                "PTHR45662:SF8",
                "PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC2"
            ],
            [
                "A0A287A1S5-1",
                "protein_xref_panther",
                "PTHR47440",
                "RIKEN CDNA A430078G23 GENE"
            ],
            [
                "A0A287A1S5-1",
                "protein_xref_panther",
                "PTHR47440:SF1",
                "RHO/RAC GUANINE NUCLEOTIDE EXCHANGE FACTOR 18"
            ]
        ]
    },
    "readme": "Name\n   - Pig UniProtKB Xref PANTHER\n\nVersion\n   - v-2.4.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Pig UniProtKB Xref PANTHER contains Sus scrofa [taxid:9823] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products.\n\nDescription Domain\n   Keywords\n   - protein family\n   - PANTHER\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sus_scrofa.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n   Output Subdomain\n      Name: pig_protein_xref_panther.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_panther.csv\n      Name: pig_protein_xref_panther.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_panther.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"21234\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"24932\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"21243\"",
    "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_xref_panther.csv"
}