{ "bcoid": "GLY_000928", "title": "Pig Proteoform Phosphorylation Citations (UniProtKB)", "description": "The Pig Proteoform Phosphorylation Citations (UniProtKB) dataset contains pig [taxid:1758] publication ...", "filename": "pig_proteoform_citations_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "Phosphorylation Citations UniProtKB" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "D5K8A9-1...", "The equatori..." ], [ "Q9GLG4-1...", "Identificati..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "D5K8A9-1", "The equatorial subsegment in mammalian spermatozoa is enriched in tyrosine phosphorylated proteins.", "Biology of reproduction", "2008-09", "Jones Roy, James Peter S, Oxley David, Coadwell John, Suzuki-Toyota Fumie, Howes Elizabeth A", "protein_xref_pubmed", "18448843", "protein_xref_uniprotkb", "D5K8A9" ], [ "Q9GLG4-1", "Identification and characterization of novel chromogranin B-derived peptides from porcine chromaffin granules by liquid chromatography/electrospray tandem MS.", "European journal of biochemistry", "2001-01", "Wang Z, Vandenberghe I, Depreitere J, Devreese B, Clerens S, Nouwen E J, Van Beeumen J, De Potter W", "protein_xref_pubmed", "11168356", "protein_xref_uniprotkb", "Q9GLG4" ], [ "P68005-1", "Ser(13)-phosphorylated PYY from porcine intestine with a potent biological activity.", "FEBS letters", "2001-03-09", "Chen Z, Eriste E, Jonsson A P, Norberg A, Nepomuceno D, Lovenberg T W, Bergman T, Efendic S, J\u00f6rnvall H, Sillard R", "protein_xref_pubmed", "11248248", "protein_xref_uniprotkb", "P68005" ], [ "P19156-1", "Reversible phosphorylation of both Tyr7 and Tyr10 in the alpha-chain of pig stomach H+,K(+)-ATPase by a membrane-bound kinase and a phosphatase.", "The Journal of biological chemistry", "1995-06-30", "Togawa K, Ishiguro T, Kaya S, Shimada A, Imagawa T, Taniguchi K", "protein_xref_pubmed", "7797539", "protein_xref_uniprotkb", "P19156" ], [ "Q28989-1", "Splicing determines the glycosylation state of ameloblastin.", "Journal of dental research", "2007-10", "Kobayashi K, Yamakoshi Y, Hu J C-C, Gomi K, Arai T, Fukae M, Krebsbach P H, Simmer J P", "protein_xref_pubmed", "17890672", "protein_xref_uniprotkb", "Q28989" ], [ "P45561-1", "Amelogenin post-translational modifications: carboxy-terminal processing and the phosphorylation of bovine and porcine `TRAP` and `LRAP` amelogenins.", "Biochemical and biophysical research communications", "1993-11-30", "Fincham A G, Moradian-Oldak J", "protein_xref_pubmed", "8250931", "protein_xref_uniprotkb", "P45561" ], [ "O97939-1", "Primary structure of the porcine 89-kDa enamelin.", "Advances in dental research", "1996-11", "Fukae M, Tanabe T, Murakami C, Dohi N, Uchida T, Shimizu M", "protein_xref_pubmed", "9206327", "protein_xref_uniprotkb", "O97939" ], [ "Q95JC9-1", "Two proline-rich peptides from pig (Sus scrofa) salivary glands generated by pre-secretory pathway underlying the action of a proteinase cleaving ProAla bonds.", "Peptides", "2005-09", "Patamia M, Messana I, Petruzzelli R, Vitali A, Inzitari R, Cabras T, Fanali C, Scarano E, Contucci A, Galtieri A, Castagnola M", "protein_xref_pubmed", "16112392", "protein_xref_uniprotkb", "Q95JC9" ], [ "O18734-1", "A novel protein phosphatase-1 inhibitory protein potentiated by protein kinase C. Isolation from porcine aorta media and characterization.", "Journal of biochemistry", "1995 Dec", "Eto M, Ohmori T, Suzuki M, Furuya K, Morita F", "protein_xref_pubmed", "8720121", "protein_xref_uniprotkb", "O18734" ], [ "O18734-1", "Phosphorylation of CPI-17, an inhibitory phosphoprotein of smooth muscle myosin phosphatase, by Rho-kinase.", "FEBS letters", "2000 Jun 23", "Koyama M, Ito M, Feng J, Seko T, Shiraki K, Takase K, Hartshorne DJ, Nakano T", "protein_xref_pubmed", "10869555", "protein_xref_uniprotkb", "O18734" ], [ "O18734-1", "Phosphorylation of CPI-17, an inhibitor of myosin phosphatase, by protein kinase N.", "Biochemical and biophysical research communications", "2000 Aug 11", "Hamaguchi T, Ito M, Feng J, Seko T, Koyama M, Machida H, Takase K, Amano M, Kaibuchi K, Hartshorne DJ, Nakano T", "protein_xref_pubmed", "10924361", "protein_xref_uniprotkb", "O18734" ], [ "Q29122-1", "Calcium functionally uncouples the heads of myosin VI.", "The Journal of biological chemistry", "2003-06-27", "Morris Carl A, Wells Amber L, Yang Zhaohui, Chen Li-Qiong, Baldacchino Corradina V, Sweeney H Lee", "protein_xref_pubmed", "12682054", "protein_xref_uniprotkb", "Q29122" ], [ "A4PES0-1", "Analyses of the regulatory mechanism of porcine WEE1B: the phosphorylation sites of porcine WEE1B and mouse WEE1B are different.", "The Journal of reproduction and development", "2011-04", "Shimaoka Takuma, Nishimura Takanori, Kano Kiyoshi, Naito Kunihiko", "protein_xref_pubmed", "21123961", "protein_xref_uniprotkb", "A4PES0" ], [ "P12682-1", "PRRSV Induces HMGB1 Phosphorylation at Threonine-51 Residue to Enhance Its Secretion.", "Viruses", "2022-05-08", "Wang Rong, Zhang Jingyi, Fu Yu, Jia Linying, Zhang Yali, Bai Liang, Wang Weirong, Cheng Daxin, Liu Enqi", "protein_xref_pubmed", "35632744", "protein_xref_uniprotkb", "P12682" ], [ "Q00655-1", "Functional and physical interactions of Syk family kinases with the Vav proto-oncogene product.", "Immunity", "1996 Dec", "Deckert M, Tartare-Deckert S, Couture C, Mustelin T, Altman A", "protein_xref_pubmed", "8986718", "protein_xref_uniprotkb", "Q00655" ] ] }, "readme": "Name\n - Pig Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2021-10-15T08:00:04.645468\n\nModified on\n - 2024-02-28T15:26:28\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Pig Proteoform Phosphorylation Citations (UniProtKB) dataset contains pig [taxid:1758] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n - Phosphorylation\n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: pig_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_proteoform_phosphorylation_sites_uniprotkb.csv\n Output Subdomain\n Name: pig_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n Name: pig_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"15\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"12\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"15\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"15\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"15\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"13\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_proteoform_citations_phosphorylation_sites_uniprotkb.csv" }