{ "bcoid": "GLY_000922", "title": "Human Glycogenes (GlycoEnzOnto)", "description": "", "filename": "human_protein_glycogenes_glycoenzonto.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tag": [ "Glycogenes" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P15291-1...", "B4GALT1..." ], [ "P15291-1...", "GGTB2..." ] ], "headers": [ "uniprotkb_ca...", "gene_name..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_name" }, { "type": "string", "label": "gene_id" }, { "type": "string", "label": "recommended_name_full" } ], [ "P15291-1", "B4GALT1", "2683", "Beta-1,4-galactosyltransferase 1" ], [ "P15291-1", "GGTB2", "2683", "Beta-1,4-galactosyltransferase 1" ], [ "O60512-1", "B4GALT3", "8703", "Beta-1,4-galactosyltransferase 3" ], [ "O60513-1", "B4GALT4", "8702", "Beta-1,4-galactosyltransferase 4" ], [ "O60909-1", "B4GALT2", "8704", "Beta-1,4-galactosyltransferase 2" ], [ "O43286-1", "B4GALT5", "9334", "Beta-1,4-galactosyltransferase 5" ], [ "Q9Y5Z6-1", "B3GALT1", "8708", "Beta-1,3-galactosyltransferase 1" ], [ "O43825-1", "B3GALT2", "8707", "Beta-1,3-galactosyltransferase 2" ], [ "O60507-1", "TPST1", "8460", "Protein-tyrosine sulfotransferase 1" ], [ "O60704-1", "TPST2", "8459", "Protein-tyrosine sulfotransferase 2" ], [ "O43252-1", "PAPSS1", "9061", "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1" ], [ "O43252-1", "ATPSK1", "9061", "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1" ], [ "O43252-1", "PAPSS", "9061", "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1" ], [ "O95340-1", "PAPSS2", "9060", "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2" ], [ "O95340-1", "ATPSK2", "9060", "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2" ], [ "P52848-1", "NDST1", "3340", "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1" ], [ "P52848-1", "HSST", "3340", "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1" ], [ "P52848-1", "HSST1", "3340", "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1" ], [ "P52849-1", "NDST2", "8509", "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2" ], [ "P52849-1", "HSST2", "8509", "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2" ], [ "O95803-1", "NDST3", "9348", "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3" ], [ "O95803-1", "HSST3", "9348", "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3" ], [ "Q9H3R1-1", "NDST4", "64579", "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4" ], [ "Q9H3R1-1", "HSST4", "64579", "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4" ], [ "O94923-1", "GLCE", "26035", "D-glucuronyl C5-epimerase" ], [ "O94923-1", "KIAA0836", "26035", "D-glucuronyl C5-epimerase" ], [ "Q8IUR5-5", "TMTC1", "83857", "Protein O-mannosyl-transferase TMTC1" ], [ "Q8N394-1", "TMTC2", "160335", "Protein O-mannosyl-transferase TMTC2" ], [ "Q6ZXV5-1", "TMTC3", "160418", "Protein O-mannosyl-transferase TMTC3" ], [ "Q5T4D3-1", "TMTC4", "84899", "Protein O-mannosyl-transferase TMTC4" ], [ "Q9H5K3-1", "POMK", "84197", "Protein O-mannose kinase" ], [ "Q9H5K3-1", "SGK196", "84197", "Protein O-mannose kinase" ], [ "Q8NAT1-1", "POMGNT2", "84892", "Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2" ], [ "Q8NAT1-1", "AGO61", "84892", "Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2" ], [ "Q8NAT1-1", "C3orf39", "84892", "Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2" ], [ "Q8NAT1-1", "EOGTL", "84892", "Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2" ], [ "Q8NAT1-1", "GTDC2", "84892", "Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2" ], [ "O75072-1", "FKTN", "2218", "Ribitol-5-phosphate transferase FKTN" ], [ "O75072-1", "FCMD", "2218", "Ribitol-5-phosphate transferase FKTN" ], [ "Q9H9S5-1", "FKRP", "79147", "Ribitol 5-phosphate transferase FKRP" ], [ "O95461-1", "LARGE1", "9215", "Xylosyl- and glucuronyltransferase LARGE1" ], [ "O95461-1", "LARGE", "9215", "Xylosyl- and glucuronyltransferase LARGE1" ], [ "O95461-1", "KIAA0609", "9215", "Xylosyl- and glucuronyltransferase LARGE1" ], [ "Q8N3Y3-1", "LARGE2", "120071", "Xylosyl- and glucuronyltransferase LARGE2" ], [ "Q8N3Y3-1", "GYLTL1B", "120071", "Xylosyl- and glucuronyltransferase LARGE2" ], [ "Q9Y2B1-1", "RXYLT1", "10329", "Ribitol-5-phosphate xylosyltransferase 1" ], [ "Q9Y2B1-1", "TMEM5", "10329", "Ribitol-5-phosphate xylosyltransferase 1" ], [ "O43505-1", "B4GAT1", "11041", "Beta-1,4-glucuronyltransferase 1" ], [ "O43505-1", "B3GNT1", "11041", "Beta-1,4-glucuronyltransferase 1" ], [ "O43505-1", "B3GNT6", "11041", "Beta-1,4-glucuronyltransferase 1" ], [ "Q9Y6A1-1", "POMT1", "10585", "Protein O-mannosyl-transferase 1" ], [ "Q9UKY4-1", "POMT2", "29954", "Protein O-mannosyl-transferase 2" ], [ "Q3V5L5-1", "MGAT5B", "146664", "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" ], [ "Q3V5L5-1", "KIAA2008", "146664", "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" ], [ "Q8WZA1-1", "POMGNT1", "55624", "Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1" ], [ "Q8WZA1-1", "MGAT1.2", "55624", "Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1" ], [ "Q8WZA1-1", "DKFZp761B182", "55624", "Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1" ], [ "Q8NCR0-1", "B3GALNT2", "148789", "UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2" ], [ "O15294-1", "OGT", "8473", "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" ], [ "O60502-1", "OGA", "10724", "Protein O-GlcNAcase" ], [ "O60502-1", "MGEA5", "10724", "Protein O-GlcNAcase" ], [ "O60502-1", "HEXC", "10724", "Protein O-GlcNAcase" ], [ "O60502-1", "KIAA0679", "10724", "Protein O-GlcNAcase" ], [ "O60502-1", "MEA5", "10724", "Protein O-GlcNAcase" ], [ "Q8NBL1-1", "POGLUT1", "56983", "Protein O-glucosyltransferase 1" ], [ "Q8NBL1-1", "C3orf9", "56983", "Protein O-glucosyltransferase 1" ], [ "Q8NBL1-1", "CLP46", "56983", "Protein O-glucosyltransferase 1" ], [ "Q8NBL1-1", "KTELC1", "56983", "Protein O-glucosyltransferase 1" ], [ "Q8NBL1-1", "MDSRP", "56983", "Protein O-glucosyltransferase 1" ], [ "Q7Z4H8-1", "POGLUT3", "143888", "Protein O-glucosyltransferase 3" ], [ "Q7Z4H8-1", "KDELC2", "143888", "Protein O-glucosyltransferase 3" ], [ "Q4G148-1", "GXYLT1", "283464", "Glucoside xylosyltransferase 1" ], [ "Q4G148-1", "GLT8D3", "283464", "Glucoside xylosyltransferase 1" ], [ "A0PJZ3-1", "GXYLT2", "727936", "Glucoside xylosyltransferase 2" ], [ "A0PJZ3-1", "GLT8D4", "727936", "Glucoside xylosyltransferase 2" ], [ "Q8NBI6-1", "XXYLT1", "152002", "Xyloside xylosyltransferase 1" ], [ "Q8NBI6-1", "C3orf21", "152002", "Xyloside xylosyltransferase 1" ], [ "Q8NCG5-1", "CHST4", "10164", "Carbohydrate sulfotransferase 4" ], [ "Q9NS00-1", "C1GALT1", "56913", "Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1" ], [ "O95395-1", "GCNT3", "9245", "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3" ], [ "Q6ZMB0-1", "B3GNT6", "192134", "Acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase" ], [ "Q9UNA3-1", "A4GNT", "51146", "Alpha-1,4-N-acetylglucosaminyltransferase" ], [ "Q02742-1", "GCNT1", "2650", "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase" ], [ "Q02742-1", "NACGT2", "2650", "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase" ] ] }, "readme": "Name\n - Human Glycogenes (GlycoEnzOnto)\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - \n\nDescription Domain\n Keywords\n - glycogenes\n - enzymes\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to REACTOME database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_glycogenes_glycoenzonto.csv\n URI: https:/data.glygen.org/ln2downloads/glycogenes/2024_02_14/human_glycogenes_glycoenzonto.csv\n Output Subdomain\n Name: human_protein_glycogenes_glycoenzonto.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_glycogenes_glycoenzonto.csv\n Name: human_protein_glycogenes_glycoenzonto.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_glycogenes_glycoenzonto.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"400\"\n Name: \"gene_name\"\n Description: \"\"Official gene name/symbol assigned to the gene. Human gene name/symbol are approved by the HUGO Gene Nomenclature Committee (HGNC) and mouse gene name are approved by the Mouse Genome Informatics (MGI)\"\n Unique Values: \"744\"\n Name: \"gene_id\"\n Description: \"NCBI Gene identifier\"\n Unique Values: \"400\"\n Name: \"recommended_name_full\"\n Description: \"Recommended full name of the protein in the UniProtKB database\"\n Unique Values: \"400\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/human_protein_glycogenes_glycoenzonto.csv" }