{
    "bcoid": "GLY_000921",
    "title": "Pig UniProtKB Xref Reactome",
    "description": "The Pig UniProtKB Xref Reactome contains Sus scrofa [taxid:9823] UniProtKB canonical accessions cross-referenced ...",
    "filename": "pig_protein_xref_reactome.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Reactome cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "I3LT93-1...",
                "protein_xref..."
            ],
            [
                "A0A5G2QDB9-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "I3LT93-1",
                "protein_xref_reactome",
                "R-SSC-189451",
                "Heme biosynthesis"
            ],
            [
                "A0A5G2QDB9-1",
                "protein_xref_reactome",
                "R-SSC-2029485",
                "Role of phospholipids in phagocytosis"
            ],
            [
                "I3LQS2-1",
                "protein_xref_reactome",
                "R-SSC-73621",
                "Pyrimidine catabolism"
            ],
            [
                "I3LQS2-1",
                "protein_xref_reactome",
                "R-SSC-74259",
                "Purine catabolism"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-383280",
                "Nuclear Receptor transcription pathway"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-383280",
                "Nuclear Receptor transcription pathway"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-4090294",
                "SUMOylation of intracellular receptors"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-3371497",
                "HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-3371497",
                "HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5625886",
                "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5625886",
                "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5625886",
                "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5625886",
                "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5625886",
                "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5625886",
                "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5625886",
                "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5625886",
                "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5625886",
                "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5625886",
                "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-5689880",
                "Ub-specific processing proteases"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-8940973",
                "RUNX2 regulates osteoblast differentiation"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-3371497",
                "HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-3371497",
                "HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand"
            ],
            [
                "F1RTM6-1",
                "protein_xref_reactome",
                "R-SSC-3371497",
                "HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand"
            ],
            [
                "P01232-1",
                "protein_xref_reactome",
                "R-SSC-193993",
                "Mineralocorticoid biosynthesis"
            ],
            [
                "P01232-1",
                "protein_xref_reactome",
                "R-SSC-209822",
                "Glycoprotein hormones"
            ],
            [
                "P01232-1",
                "protein_xref_reactome",
                "R-SSC-209822",
                "Glycoprotein hormones"
            ],
            [
                "P01232-1",
                "protein_xref_reactome",
                "R-SSC-8866910",
                "TFAP2 (AP-2) family regulates transcription of growth factors and their receptors"
            ],
            [
                "P01232-1",
                "protein_xref_reactome",
                "R-SSC-975578",
                "Reactions specific to the complex N-glycan synthesis pathway"
            ],
            [
                "P01232-1",
                "protein_xref_reactome",
                "R-SSC-193048",
                "Androgen biosynthesis"
            ],
            [
                "P01232-1",
                "protein_xref_reactome",
                "R-SSC-418555",
                "G alpha (s) signalling events"
            ],
            [
                "P01232-1",
                "protein_xref_reactome",
                "R-SSC-375281",
                "Hormone ligand-binding receptors"
            ],
            [
                "A0A5G2QG63-1",
                "protein_xref_reactome",
                "R-SSC-2024096",
                "HS-GAG degradation"
            ],
            [
                "A0A5G2QG63-1",
                "protein_xref_reactome",
                "R-SSC-6798695",
                "Neutrophil degranulation"
            ],
            [
                "P01238-1",
                "protein_xref_reactome",
                "R-SSC-1170546",
                "Prolactin receptor signaling"
            ],
            [
                "P01238-1",
                "protein_xref_reactome",
                "R-SSC-1170546",
                "Prolactin receptor signaling"
            ],
            [
                "P01238-1",
                "protein_xref_reactome",
                "R-SSC-1170546",
                "Prolactin receptor signaling"
            ],
            [
                "P01238-1",
                "protein_xref_reactome",
                "R-SSC-1170546",
                "Prolactin receptor signaling"
            ],
            [
                "P01238-1",
                "protein_xref_reactome",
                "R-SSC-1170546",
                "Prolactin receptor signaling"
            ],
            [
                "P01238-1",
                "protein_xref_reactome",
                "R-SSC-1170546",
                "Prolactin receptor signaling"
            ],
            [
                "P01238-1",
                "protein_xref_reactome",
                "R-SSC-1170546",
                "Prolactin receptor signaling"
            ],
            [
                "P01238-1",
                "protein_xref_reactome",
                "R-SSC-982772",
                "Growth hormone receptor signaling"
            ],
            [
                "F1SUD9-1",
                "protein_xref_reactome",
                "R-SSC-1855167",
                "Synthesis of pyrophosphates in the cytosol"
            ],
            [
                "F1SUD9-1",
                "protein_xref_reactome",
                "R-SSC-1855191",
                "Synthesis of IPs in the nucleus"
            ],
            [
                "F1SUD0-1",
                "protein_xref_reactome",
                "R-SSC-416476",
                "G alpha (q) signalling events"
            ],
            [
                "F1SUD0-1",
                "protein_xref_reactome",
                "R-SSC-416476",
                "G alpha (q) signalling events"
            ],
            [
                "F1SUD0-1",
                "protein_xref_reactome",
                "R-SSC-416476",
                "G alpha (q) signalling events"
            ],
            [
                "F1SUD0-1",
                "protein_xref_reactome",
                "R-SSC-389397",
                "Orexin and neuropeptides FF and QRFP bind to their respective receptors"
            ],
            [
                "F1SUD5-1",
                "protein_xref_reactome",
                "R-SSC-3214842",
                "HDMs demethylate histones"
            ],
            [
                "F1SUD5-1",
                "protein_xref_reactome",
                "R-SSC-3214842",
                "HDMs demethylate histones"
            ],
            [
                "I3LHP2-1",
                "protein_xref_reactome",
                "R-SSC-373760",
                "L1CAM interactions"
            ],
            [
                "I3LHP0-1",
                "protein_xref_reactome",
                "R-SSC-5358493",
                "Synthesis of diphthamide-EEF2"
            ],
            [
                "I3LHP5-1",
                "protein_xref_reactome",
                "R-SSC-2029482",
                "Regulation of actin dynamics for phagocytic cup formation"
            ],
            [
                "I3LHP5-1",
                "protein_xref_reactome",
                "R-SSC-5627123",
                "RHO GTPases activate PAKs"
            ],
            [
                "I3LHP5-1",
                "protein_xref_reactome",
                "R-SSC-399954",
                "Sema3A PAK dependent Axon repulsion"
            ],
            [
                "I3LHP5-1",
                "protein_xref_reactome",
                "R-SSC-2029482",
                "Regulation of actin dynamics for phagocytic cup formation"
            ],
            [
                "I3LHP5-1",
                "protein_xref_reactome",
                "R-SSC-2029482",
                "Regulation of actin dynamics for phagocytic cup formation"
            ],
            [
                "I3LHP5-1",
                "protein_xref_reactome",
                "R-SSC-399954",
                "Sema3A PAK dependent Axon repulsion"
            ],
            [
                "I3LHP5-1",
                "protein_xref_reactome",
                "R-SSC-399954",
                "Sema3A PAK dependent Axon repulsion"
            ],
            [
                "A0A287BFE7-1",
                "protein_xref_reactome",
                "R-SSC-2022854",
                "Keratan sulfate biosynthesis"
            ],
            [
                "A0A287BFE7-1",
                "protein_xref_reactome",
                "R-SSC-2022928",
                "HS-GAG biosynthesis"
            ],
            [
                "A0A287BFE7-1",
                "protein_xref_reactome",
                "R-SSC-727802",
                "Transport of nucleotide sugars"
            ],
            [
                "A0A287BFE7-1",
                "protein_xref_reactome",
                "R-SSC-727802",
                "Transport of nucleotide sugars"
            ],
            [
                "A0A287BFE7-1",
                "protein_xref_reactome",
                "R-SSC-727802",
                "Transport of nucleotide sugars"
            ],
            [
                "F1SKE6-1",
                "protein_xref_reactome",
                "R-SSC-72163",
                "mRNA Splicing - Major Pathway"
            ],
            [
                "F1SKE6-1",
                "protein_xref_reactome",
                "R-SSC-72163",
                "mRNA Splicing - Major Pathway"
            ],
            [
                "F1SKE6-1",
                "protein_xref_reactome",
                "R-SSC-72163",
                "mRNA Splicing - Major Pathway"
            ],
            [
                "F1SKE7-1",
                "protein_xref_reactome",
                "R-SSC-1650814",
                "Collagen biosynthesis and modifying enzymes"
            ],
            [
                "I3LGF1-1",
                "protein_xref_reactome",
                "R-SSC-416700",
                "Other semaphorin interactions"
            ],
            [
                "A0A287BF71-1",
                "protein_xref_reactome",
                "R-SSC-2028269",
                "Signaling by Hippo"
            ],
            [
                "A0A287BF71-1",
                "protein_xref_reactome",
                "R-SSC-191650",
                "Regulation of gap junction activity"
            ],
            [
                "A0A287BF71-1",
                "protein_xref_reactome",
                "R-SSC-191650",
                "Regulation of gap junction activity"
            ],
            [
                "A0A287BF71-1",
                "protein_xref_reactome",
                "R-SSC-351906",
                "Apoptotic cleavage of cell adhesion  proteins"
            ],
            [
                "B1NI70-1",
                "protein_xref_reactome",
                "R-SSC-499943",
                "Interconversion of nucleotide di- and triphosphates"
            ],
            [
                "A0A287BF79-1",
                "protein_xref_reactome",
                "R-SSC-419408",
                "Lysosphingolipid and LPA receptors"
            ],
            [
                "I3LS26-1",
                "protein_xref_reactome",
                "R-SSC-114608",
                "Platelet degranulation "
            ],
            [
                "I3LS26-1",
                "protein_xref_reactome",
                "R-SSC-9840310",
                "Glycosphingolipid catabolism"
            ],
            [
                "I3LS26-1",
                "protein_xref_reactome",
                "R-SSC-9840310",
                "Glycosphingolipid catabolism"
            ],
            [
                "I3LS26-1",
                "protein_xref_reactome",
                "R-SSC-9840310",
                "Glycosphingolipid catabolism"
            ],
            [
                "I3LS26-1",
                "protein_xref_reactome",
                "R-SSC-9840310",
                "Glycosphingolipid catabolism"
            ],
            [
                "I3LS26-1",
                "protein_xref_reactome",
                "R-SSC-9840310",
                "Glycosphingolipid catabolism"
            ],
            [
                "I3LS26-1",
                "protein_xref_reactome",
                "R-SSC-9840310",
                "Glycosphingolipid catabolism"
            ],
            [
                "I3LS26-1",
                "protein_xref_reactome",
                "R-SSC-9840310",
                "Glycosphingolipid catabolism"
            ],
            [
                "I3LS26-1",
                "protein_xref_reactome",
                "R-SSC-9840310",
                "Glycosphingolipid catabolism"
            ]
        ]
    },
    "readme": "Name\n   - Pig UniProtKB Xref Reactome\n\nVersion\n   - v-2.4.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Pig UniProtKB Xref Reactome contains Sus scrofa [taxid:9823] UniProtKB canonical accessions cross-referenced to Reactome database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database.\n\nDescription Domain\n   Keywords\n   - pathways\n   - reactions\n   - REACTOME\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to REACTOME database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sus_scrofa.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n   Output Subdomain\n      Name: pig_protein_xref_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_reactome.csv\n      Name: pig_protein_xref_reactome.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_reactome.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"7912\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1354\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"1354\"",
    "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_xref_reactome.csv"
}