{ "bcoid": "GLY_000919", "title": "Pig UniProtKB Xref Bgee", "description": "The Pig UniProtKB Xref Bgee dataset contains pig [taxid:9823] UniProtKB canonical accessions cross-referenced ...", "filename": "pig_protein_xref_bgee.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "Bgee" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A5G2RAB5-1...", "protein_xref..." ], [ "A0A287AGD8-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "A0A5G2RAB5-1", "protein_xref_bgee", "ENSSSCG00000000843", "Expressed in caecum and 42 other cell types or tissues" ], [ "A0A287AGD8-1", "protein_xref_bgee", "ENSSSCG00000006852", "Expressed in dorsal plus ventral thalamus and 26 other cell types or tissues" ], [ "A0A287BN22-1", "protein_xref_bgee", "ENSSSCG00000013395", "Expressed in oocyte and 46 other cell types or tissues" ], [ "A0A287AE97-1", "protein_xref_bgee", "ENSSSCG00000038329", "Expressed in pituitary gland and 42 other cell types or tissues" ], [ "A0A287BN27-1", "protein_xref_bgee", "ENSSSCG00000012685", "Expressed in epididymis and 42 other cell types or tissues" ], [ "A0A286ZXT3-1", "protein_xref_bgee", "ENSSSCG00000010092", "Expressed in prefrontal cortex and 42 other cell types or tissues" ], [ "A0A4X1VDU3-1", "protein_xref_bgee", "ENSSSCG00000004370", "Expressed in caecum and 41 other cell types or tissues" ], [ "F1RWM0-1", "protein_xref_bgee", "ENSSSCG00000006162", "Expressed in oocyte and 45 other cell types or tissues" ], [ "A0A8D0PQ51-1", "protein_xref_bgee", "ENSSSCG00000026990", "Expressed in semimembranosus muscle and 45 other cell types or tissues" ], [ "I3L942-1", "protein_xref_bgee", "ENSSSCG00000017139", "Expressed in subcutaneous adipose tissue and 43 other cell types or tissues" ], [ "A0A4X1U326-1", "protein_xref_bgee", "ENSSSCG00000033878", "Expressed in blood and 23 other cell types or tissues" ], [ "A0A5G2Q7W2-1", "protein_xref_bgee", "ENSSSCG00000037416", "Expressed in lung and 40 other cell types or tissues" ], [ "A0A287AZX1-1", "protein_xref_bgee", "ENSSSCG00000038283", "Expressed in uterus and 2 other cell types or tissues" ], [ "A0A287BPN5-1", "protein_xref_bgee", "ENSSSCG00000001823", "Expressed in liver and 18 other cell types or tissues" ], [ "A0A287BAF3-1", "protein_xref_bgee", "ENSSSCG00000037334", "Expressed in semimembranosus muscle and 37 other cell types or tissues" ], [ "F1SRD2-1", "protein_xref_bgee", "ENSSSCG00000011296", "Expressed in omentum and 44 other cell types or tissues" ], [ "I3LFU4-1", "protein_xref_bgee", "ENSSSCG00000025349", "Expressed in pituitary gland and 43 other cell types or tissues" ], [ "A0A286ZTQ8-1", "protein_xref_bgee", "ENSSSCG00000035854", "Expressed in adult mammalian kidney and 41 other cell types or tissues" ], [ "I3LT93-1", "protein_xref_bgee", "ENSSSCG00000010742", "Expressed in blood and 45 other cell types or tissues" ], [ "I3LFU3-1", "protein_xref_bgee", "ENSSSCG00000017146", "Expressed in penis and 40 other cell types or tissues" ], [ "A0A5G2RE27-1", "protein_xref_bgee", "ENSSSCG00000030874", "Expressed in duodenum and 2 other cell types or tissues" ], [ "A0A5G2QDB9-1", "protein_xref_bgee", "ENSSSCG00000015819", "Expressed in right lobe of liver and 41 other cell types or tissues" ], [ "A0A287B9Q3-1", "protein_xref_bgee", "ENSSSCG00000000789", "Expressed in Ammon's horn and 31 other cell types or tissues" ], [ "I3LQS2-1", "protein_xref_bgee", "ENSSSCG00000028210", "Expressed in caecum and 36 other cell types or tissues" ], [ "A0A5G2QFB4-1", "protein_xref_bgee", "ENSSSCG00000031449", "Expressed in liver and 11 other cell types or tissues" ], [ "K7GSF4-1", "protein_xref_bgee", "ENSSSCG00000012727", "Expressed in omentum and 42 other cell types or tissues" ], [ "A0A480LBW8-1", "protein_xref_bgee", "ENSSSCG00000016917", "Expressed in penis and 33 other cell types or tissues" ], [ "F1S414-1", "protein_xref_bgee", "ENSSSCG00000010687", "Expressed in hippocampal formation and 44 other cell types or tissues" ], [ "A0A287A1S5-1", "protein_xref_bgee", "ENSSSCG00000013568", "Expressed in blood and 41 other cell types or tissues" ], [ "A0A5G2RE32-1", "protein_xref_bgee", "ENSSSCG00000011102", "Expressed in ovary and 42 other cell types or tissues" ], [ "F1RTM0-1", "protein_xref_bgee", "ENSSSCG00000009285", "Expressed in heart left ventricle and 33 other cell types or tissues" ], [ "A0A5G2RCT6-1", "protein_xref_bgee", "ENSSSCG00000009290", "Expressed in psoas major muscle and 43 other cell types or tissues" ], [ "F1RTM6-1", "protein_xref_bgee", "ENSSSCG00000012371", "Expressed in epididymis and 35 other cell types or tissues" ], [ "F1RPC4-1", "protein_xref_bgee", "ENSSSCG00000030345", "Expressed in prefrontal cortex and 32 other cell types or tissues" ], [ "A0A287A1X6-1", "protein_xref_bgee", "ENSSSCG00000000875", "Expressed in ileum and 18 other cell types or tissues" ], [ "F1SQP4-1", "protein_xref_bgee", "ENSSSCG00000000905", "Expressed in heart left ventricle and 45 other cell types or tissues" ], [ "A0A286ZWJ2-1", "protein_xref_bgee", "ENSSSCG00000036257", "Expressed in Ammon's horn and 45 other cell types or tissues" ], [ "A0A5G2QM40-1", "protein_xref_bgee", "ENSSSCG00000007681", "Expressed in granulosa cell and 44 other cell types or tissues" ], [ "A0A5G2QVU6-1", "protein_xref_bgee", "ENSSSCG00000007212", "Expressed in testis and 29 other cell types or tissues" ], [ "I3L7Y8-1", "protein_xref_bgee", "ENSSSCG00000001537", "Expressed in longissimus lumborum muscle and 43 other cell types or tissues" ], [ "C0JPM4-1", "protein_xref_bgee", "ENSSSCG00000017164", "Expressed in subcutaneous adipose tissue and 43 other cell types or tissues" ], [ "A0A286ZR27-1", "protein_xref_bgee", "ENSSSCG00000002378", "Expressed in skeletal muscle tissue and 45 other cell types or tissues" ], [ "P50131-1", "protein_xref_bgee", "ENSSSCG00000003788", "Expressed in heart left ventricle and 36 other cell types or tissues" ], [ "P27917-1", "protein_xref_bgee", "ENSSSCG00000015069", "Expressed in liver and 24 other cell types or tissues" ], [ "A0A287AVJ6-1", "protein_xref_bgee", "ENSSSCG00000040528", "Expressed in oocyte and 45 other cell types or tissues" ], [ "A0A5G2QG63-1", "protein_xref_bgee", "ENSSSCG00000009237", "Expressed in mesenteric lymph node and 43 other cell types or tissues" ], [ "A0A287BHM1-1", "protein_xref_bgee", "ENSSSCG00000004570", "Expressed in semimembranosus muscle and 44 other cell types or tissues" ], [ "A0A286ZRC3-1", "protein_xref_bgee", "ENSSSCG00000005671", "Expressed in psoas major muscle and 44 other cell types or tissues" ], [ "A0A287BB11-1", "protein_xref_bgee", "ENSSSCG00000009893", "Expressed in lung and 25 other cell types or tissues" ], [ "F1SUD9-1", "protein_xref_bgee", "ENSSSCG00000030204", "Expressed in oocyte and 45 other cell types or tissues" ], [ "A0A286ZVX0-1", "protein_xref_bgee", "ENSSSCG00000008077", "Expressed in psoas major muscle and 44 other cell types or tissues" ], [ "F1SUD0-1", "protein_xref_bgee", "ENSSSCG00000010266", "Expressed in oocyte" ], [ "F1RSN6-1", "protein_xref_bgee", "ENSSSCG00000005908", "Expressed in granulosa cell and 37 other cell types or tissues" ], [ "F1SUD5-1", "protein_xref_bgee", "ENSSSCG00000008080", "Expressed in forelimb bud and 42 other cell types or tissues" ], [ "F1SUD6-1", "protein_xref_bgee", "ENSSSCG00000008079", "Expressed in granulosa cell and 44 other cell types or tissues" ], [ "I3LHP2-1", "protein_xref_bgee", "ENSSSCG00000023191", "Expressed in hindlimb bud and 45 other cell types or tissues" ], [ "I3LHP0-1", "protein_xref_bgee", "ENSSSCG00000028078", "Expressed in oocyte and 43 other cell types or tissues" ], [ "I3LHP5-1", "protein_xref_bgee", "ENSSSCG00000030378", "Expressed in oocyte and 41 other cell types or tissues" ], [ "I3LHP8-1", "protein_xref_bgee", "ENSSSCG00000027428", "Expressed in longissimus lumborum muscle and 39 other cell types or tissues" ], [ "A0A8W4FF87-1", "protein_xref_bgee", "ENSSSCG00000011412", "Expressed in oocyte and 23 other cell types or tissues" ], [ "A0A287BFE7-1", "protein_xref_bgee", "ENSSSCG00000039368", "Expressed in blood and 42 other cell types or tissues" ], [ "A0A286ZNE1-1", "protein_xref_bgee", "ENSSSCG00000040230", "Expressed in spleen" ], [ "A0A286ZNE3-1", "protein_xref_bgee", "ENSSSCG00000039095", "Expressed in duodenum and 19 other cell types or tissues" ], [ "K7GQH5-1", "protein_xref_bgee", "ENSSSCG00000004917", "Expressed in tonsil and 43 other cell types or tissues" ], [ "A0A286ZNE5-1", "protein_xref_bgee", "ENSSSCG00000032835", "Expressed in adult mammalian kidney and 46 other cell types or tissues" ], [ "A0A286ZNE4-1", "protein_xref_bgee", "ENSSSCG00000039358", "Expressed in adult mammalian kidney and 15 other cell types or tissues" ], [ "F1SKE6-1", "protein_xref_bgee", "ENSSSCG00000011684", "Expressed in mesenteric lymph node and 44 other cell types or tissues" ], [ "F1SKE7-1", "protein_xref_bgee", "ENSSSCG00000011683", "Expressed in ovary and 40 other cell types or tissues" ], [ "C9K505-1", "protein_xref_bgee", "ENSSSCG00000016961", "Expressed in pituitary gland and 44 other cell types or tissues" ], [ "A0A4X1UGW7-1", "protein_xref_bgee", "ENSSSCG00000010504", "Expressed in ileum and 42 other cell types or tissues" ], [ "A0A8D1DX92-1", "protein_xref_bgee", "ENSSSCG00000010158", "Expressed in metanephros cortex and 43 other cell types or tissues" ], [ "A0A8D1DGD3-1", "protein_xref_bgee", "ENSSSCG00000017829", "Expressed in testis and 43 other cell types or tissues" ], [ "C1JEX7-1", "protein_xref_bgee", "ENSSSCG00000011080", "Expressed in testis and 9 other cell types or tissues" ], [ "I3LRZ7-1", "protein_xref_bgee", "ENSSSCG00000027119", "Expressed in oocyte and 44 other cell types or tissues" ], [ "A0A8W4FDR0-1", "protein_xref_bgee", "ENSSSCG00000000549", "Expressed in heart left ventricle and 43 other cell types or tissues" ], [ "A0A5G2R105-1", "protein_xref_bgee", "ENSSSCG00000040051", "Expressed in testis and 1 other cell type or tissue" ], [ "A0A287AQF5-1", "protein_xref_bgee", "ENSSSCG00000016521", "Expressed in hippocampal formation and 20 other cell types or tissues" ], [ "A0A5G2RGX7-1", "protein_xref_bgee", "ENSSSCG00000025266", "Expressed in testis and 16 other cell types or tissues" ], [ "A0A8D0JKZ1-1", "protein_xref_bgee", "ENSSSCG00000014389", "Expressed in prefrontal cortex and 22 other cell types or tissues" ], [ "A0A8D1D4H1-1", "protein_xref_bgee", "ENSSSCG00000040617", "Expressed in oocyte and 43 other cell types or tissues" ], [ "A0A5G2RDZ5-1", "protein_xref_bgee", "ENSSSCG00000036328", "Expressed in forelimb bud and 41 other cell types or tissues" ], [ "A0A287AUY1-1", "protein_xref_bgee", "ENSSSCG00000034630", "Expressed in hippocampal formation and 43 other cell types or tissues" ], [ "A0A287BF76-1", "protein_xref_bgee", "ENSSSCG00000039193", "Expressed in epididymis and 10 other cell types or tissues" ], [ "A0A4X1UKY7-1", "protein_xref_bgee", "ENSSSCG00000024253", "Expressed in hindlimb bud and 42 other cell types or tissues" ] ] }, "readme": "Name\n - Pig UniProtKB Xref Bgee\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Pig UniProtKB Xref Bgee dataset contains pig [taxid:9823] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets.\n\nDescription Domain\n Keywords\n - gene expression\n - Bgee\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_xref_bgee.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_bgee.csv\n Name: pig_protein_xref_bgee.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_bgee.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"18732\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"18343\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"2158\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_xref_bgee.csv" }