{ "bcoid": "GLY_000918", "title": "Dicty NCBI Protein Linkouts", "description": "The Dicty NCBI Protein Linkouts contains dicty [taxid:44689] NCBI RefSeq accessions with their corresponding ...", "filename": "dicty_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "NCBI Gene Linkouts" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", "XP_638574", "https://glygen.org/protein/Q54PT0", "", "", "", "" ], [ "10227", "Protein", "XP_638573", "https://glygen.org/protein/Q54PT1", "", "", "", "" ], [ "10227", "Protein", "XP_638572", "https://glygen.org/protein/Q54PT2", "", "", "", "" ], [ "10227", "Protein", "XP_638571", "https://glygen.org/protein/Q54PT3", "", "", "", "" ], [ "10227", "Protein", "XP_638570", "https://glygen.org/protein/Q54PT4", "", "", "", "" ], [ "10227", "Protein", "XP_638569", "https://glygen.org/protein/Q54PT5", "", "", "", "" ], [ "10227", "Protein", "XP_638568", "https://glygen.org/protein/Q54PT6", "", "", "", "" ], [ "10227", "Protein", "XP_638567", "https://glygen.org/protein/Q54PT7", "", "", "", "" ], [ "10227", "Protein", "XP_638566", "https://glygen.org/protein/Q54PT8", "", "", "", "" ], [ "10227", "Protein", "XP_638706", "https://glygen.org/protein/Q54PT9", "", "", "", "" ], [ "10227", "Protein", "XP_638097", "https://glygen.org/protein/Q54N46", "", "", "", "" ], [ "10227", "Protein", "XP_638096", "https://glygen.org/protein/Q54N47", "", "", "", "" ], [ "10227", "Protein", "XP_638099", "https://glygen.org/protein/Q54N44", "", "", "", "" ], [ "10227", "Protein", "XP_638098", "https://glygen.org/protein/Q54N45", "", "", "", "" ], [ "10227", "Protein", "XP_638101", "https://glygen.org/protein/Q54N42", "", "", "", "" ], [ "10227", "Protein", "XP_638100", "https://glygen.org/protein/Q54N43", "", "", "", "" ], [ "10227", "Protein", "XP_638103", "https://glygen.org/protein/Q54N40", "", "", "", "" ], [ "10227", "Protein", "XP_638102", "https://glygen.org/protein/Q54N41", "", "", "", "" ], [ "10227", "Protein", "XP_638095", "https://glygen.org/protein/Q54N48", "", "", "", "" ], [ "10227", "Protein", "XP_638094", "https://glygen.org/protein/Q54N49", "", "", "", "" ], [ "10227", "Protein", "XP_635329", "https://glygen.org/protein/Q54EB1", "", "", "", "" ], [ "10227", "Protein", "XP_639026", "https://glygen.org/protein/Q54QV8", "", "", "", "" ], [ "10227", "Protein", "XP_635324", "https://glygen.org/protein/Q54EB6", "", "", "", "" ], [ "10227", "Protein", "XP_638922", "https://glygen.org/protein/Q54QV1", "", "", "", "" ], [ "10227", "Protein", "XP_635781", "https://glygen.org/protein/O96070", "", "", "", "" ], [ "10227", "Protein", "XP_638923", "https://glygen.org/protein/Q54QV0", "", "", "", "" ], [ "10227", "Protein", "XP_639030", "https://glygen.org/protein/Q54QV4", "", "", "", "" ], [ "10227", "Protein", "XP_642827", "https://glygen.org/protein/Q86AV4", "", "", "", "" ], [ "10227", "Protein", "XP_642825", "https://glygen.org/protein/Q86AV5", "", "", "", "" ], [ "10227", "Protein", "XP_642824", "https://glygen.org/protein/Q86AV6", "", "", "", "" ], [ "10227", "Protein", "XP_643476", "https://glygen.org/protein/Q86HC9", "", "", "", "" ], [ "10227", "Protein", "XP_643489", "https://glygen.org/protein/Q86HC2", "", "", "", "" ], [ "10227", "Protein", "XP_643488", "https://glygen.org/protein/Q86HC3", "", "", "", "" ], [ "10227", "Protein", "XP_643479", "https://glygen.org/protein/Q86HC7", "", "", "", "" ], [ "10227", "Protein", "XP_643486", "https://glygen.org/protein/Q86HC4", "", "", "", "" ], [ "10227", "Protein", "XP_643482", "https://glygen.org/protein/Q86HC5", "", "", "", "" ], [ "10227", "Protein", "XP_636023", "https://glygen.org/protein/Q7Z1I0", "", "", "", "" ], [ "10227", "Protein", "XP_645815", "https://glygen.org/protein/Q55BJ9", "", "", "", "" ], [ "10227", "Protein", "XP_645816", "https://glygen.org/protein/Q55BJ8", "", "", "", "" ], [ "10227", "Protein", "XP_645821", "https://glygen.org/protein/Q55BJ3", "", "", "", "" ], [ "10227", "Protein", "XP_645822", "https://glygen.org/protein/Q55BJ2", "", "", "", "" ], [ "10227", "Protein", "XP_645823", "https://glygen.org/protein/Q55BJ1", "", "", "", "" ], [ "10227", "Protein", "XP_645824", "https://glygen.org/protein/Q55BJ0", "", "", "", "" ], [ "10227", "Protein", "XP_645817", "https://glygen.org/protein/Q55BJ7", "", "", "", "" ], [ "10227", "Protein", "XP_645818", "https://glygen.org/protein/Q55BJ6", "", "", "", "" ], [ "10227", "Protein", "XP_645819", "https://glygen.org/protein/Q55BJ5", "", "", "", "" ], [ "10227", "Protein", "XP_645820", "https://glygen.org/protein/Q55BJ4", "", "", "", "" ], [ "10227", "Protein", "XP_635998", "https://glygen.org/protein/Q54GS1", "", "", "", "" ], [ "10227", "Protein", "XP_636941", "https://glygen.org/protein/Q54JJ0", "", "", "", "" ], [ "10227", "Protein", "XP_636940", "https://glygen.org/protein/Q54JJ1", "", "", "", "" ], [ "10227", "Protein", "XP_636938", "https://glygen.org/protein/Q54JJ3", "", "", "", "" ], [ "10227", "Protein", "XP_636937", "https://glygen.org/protein/Q54JJ4", "", "", "", "" ], [ "10227", "Protein", "XP_636936", "https://glygen.org/protein/Q54JJ5", "", "", "", "" ], [ "10227", "Protein", "XP_636935", "https://glygen.org/protein/Q54JJ6", "", "", "", "" ], [ "10227", "Protein", "XP_636934", "https://glygen.org/protein/Q54JJ7", "", "", "", "" ], [ "10227", "Protein", "XP_636933", "https://glygen.org/protein/Q54JJ8", "", "", "", "" ], [ "10227", "Protein", "XP_636932", "https://glygen.org/protein/Q54JJ9", "", "", "", "" ], [ "10227", "Protein", "XP_635991", "https://glygen.org/protein/Q54GS8", "", "", "", "" ], [ "10227", "Protein", "XP_635990", "https://glygen.org/protein/Q54GS9", "", "", "", "" ], [ "10227", "Protein", "XP_642551", "https://glygen.org/protein/Q86K98", "", "", "", "" ], [ "10227", "Protein", "XP_642806", "https://glygen.org/protein/Q86K96", "", "", "", "" ], [ "10227", "Protein", "XP_642805", "https://glygen.org/protein/Q86K95", "", "", "", "" ], [ "10227", "Protein", "XP_642804", "https://glygen.org/protein/Q86K94", "", "", "", "" ], [ "10227", "Protein", "XP_642803", "https://glygen.org/protein/Q86K93", "", "", "", "" ], [ "10227", "Protein", "XP_642682", "https://glygen.org/protein/Q86K92", "", "", "", "" ], [ "10227", "Protein", "XP_642685", "https://glygen.org/protein/Q86K91", "", "", "", "" ], [ "10227", "Protein", "XP_642686", "https://glygen.org/protein/Q86K90", "", "", "", "" ], [ "10227", "Protein", "XP_641069", "https://glygen.org/protein/Q9U3X4", "", "", "", "" ], [ "10227", "Protein", "XP_637304", "https://glygen.org/protein/Q54KL3", "", "", "", "" ], [ "10227", "Protein", "XP_637305", "https://glygen.org/protein/Q54KL2", "", "", "", "" ], [ "10227", "Protein", "XP_641668", "https://glygen.org/protein/Q54WP9", "", "", "", "" ], [ "10227", "Protein", "XP_637307", "https://glygen.org/protein/Q54KL0", "", "", "", "" ], [ "10227", "Protein", "XP_637340", "https://glygen.org/protein/Q54KL7", "", "", "", "" ], [ "10227", "Protein", "XP_644927", "https://glygen.org/protein/Q558Y9", "", "", "", "" ], [ "10227", "Protein", "XP_637302", "https://glygen.org/protein/Q54KL5", "", "", "", "" ], [ "10227", "Protein", "XP_637303", "https://glygen.org/protein/Q54KL4", "", "", "", "" ], [ "10227", "Protein", "XP_641674", "https://glygen.org/protein/Q54WP3", "", "", "", "" ], [ "10227", "Protein", "XP_644931", "https://glygen.org/protein/Q558Y5", "", "", "", "" ], [ "10227", "Protein", "XP_637338", "https://glygen.org/protein/Q54KL9", "", "", "", "" ], [ "10227", "Protein", "XP_637339", "https://glygen.org/protein/Q54KL8", "", "", "", "" ], [ "10227", "Protein", "XP_641670", "https://glygen.org/protein/Q54WP7", "", "", "", "" ], [ "10227", "Protein", "XP_641671", "https://glygen.org/protein/Q54WP6", "", "", "", "" ], [ "10227", "Protein", "XP_641672", "https://glygen.org/protein/Q54WP5", "", "", "", "" ], [ "10227", "Protein", "XP_641673", "https://glygen.org/protein/Q54WP4", "", "", "", "" ] ] }, "readme": "Name\n - Dicty NCBI Protein Linkouts\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty NCBI Protein Linkouts contains dicty [taxid:44689] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n - The RefSeq accessions are The dataset is derived from NCBI RefSeq Release 96, September 9, 2019\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: dicty_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_proteinnames_refseq.csv\n Name: dicty_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_xref_refseq.csv\n Output Subdomain\n Name: dicty_protein_ncbi_linkouts.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_ncbi_linkouts.csv\n Name: dicty_protein_ncbi_linkouts.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"ProviderId\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Database\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UID\"\n Description: \"NA\"\n Unique Values: \"12702\"\n Name: \"URL\"\n Description: \"NA\"\n Unique Values: \"12702\"\n Name: \"IconUrl\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UrlName\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"SubjectType\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Attribute\"\n Description: \"NA\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/dicty_protein_ncbi_linkouts.csv" }